| Motif | HOMEZ.H12RSNP.0.S.D |
| Gene (human) | HOMEZ (GeneCards) |
| Gene synonyms (human) | KIAA1443 |
| Gene (mouse) | Homez |
| Gene synonyms (mouse) | Kiaa1443 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HOMEZ.H12RSNP.0.S.D |
| Gene (human) | HOMEZ (GeneCards) |
| Gene synonyms (human) | KIAA1443 |
| Gene (mouse) | Homez |
| Gene synonyms (mouse) | Kiaa1443 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | dhvATCGTTTdn |
| GC content | 30.07% |
| Information content (bits; total / per base) | 13.3 / 1.108 |
| Data sources | HT-SELEX |
| Aligned words | 6103 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.929 | 0.906 | 0.851 | 0.822 | 0.752 | 0.736 |
| best | 0.964 | 0.952 | 0.892 | 0.87 | 0.788 | 0.775 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HD-ZF {3.1.8} (TFClass) |
| TF subfamily | ZHX {3.1.8.5} (TFClass) |
| TFClass ID | TFClass: 3.1.8.5.4 |
| HGNC | HGNC:20164 |
| MGI | MGI:2678023 |
| EntrezGene (human) | GeneID:57594 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:239099 (SSTAR profile) |
| UniProt ID (human) | HOMEZ_HUMAN |
| UniProt ID (mouse) | HOMEZ_MOUSE |
| UniProt AC (human) | Q8IX15 (TFClass) |
| UniProt AC (mouse) | Q80W88 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | HOMEZ.H12RSNP.0.S.D.pcm |
| PWM | HOMEZ.H12RSNP.0.S.D.pwm |
| PFM | HOMEZ.H12RSNP.0.S.D.pfm |
| Alignment | HOMEZ.H12RSNP.0.S.D.words.tsv |
| Threshold to P-value map | HOMEZ.H12RSNP.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | HOMEZ.H12RSNP.0.S.D_jaspar_format.txt |
| MEME format | HOMEZ.H12RSNP.0.S.D_meme_format.meme |
| Transfac format | HOMEZ.H12RSNP.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3213.75 | 654.75 | 782.75 | 1451.75 |
| 02 | 3287.25 | 605.25 | 497.25 | 1713.25 |
| 03 | 3474.0 | 1382.0 | 642.0 | 605.0 |
| 04 | 5664.0 | 396.0 | 0.0 | 43.0 |
| 05 | 0.0 | 0.0 | 0.0 | 6103.0 |
| 06 | 0.0 | 6103.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 6103.0 | 0.0 |
| 08 | 31.0 | 0.0 | 152.0 | 5920.0 |
| 09 | 570.0 | 5.0 | 8.0 | 5520.0 |
| 10 | 998.0 | 126.0 | 172.0 | 4807.0 |
| 11 | 1146.0 | 894.0 | 911.0 | 3152.0 |
| 12 | 1209.75 | 1343.75 | 1242.75 | 2306.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.527 | 0.107 | 0.128 | 0.238 |
| 02 | 0.539 | 0.099 | 0.081 | 0.281 |
| 03 | 0.569 | 0.226 | 0.105 | 0.099 |
| 04 | 0.928 | 0.065 | 0.0 | 0.007 |
| 05 | 0.0 | 0.0 | 0.0 | 1.0 |
| 06 | 0.0 | 1.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 1.0 | 0.0 |
| 08 | 0.005 | 0.0 | 0.025 | 0.97 |
| 09 | 0.093 | 0.001 | 0.001 | 0.904 |
| 10 | 0.164 | 0.021 | 0.028 | 0.788 |
| 11 | 0.188 | 0.146 | 0.149 | 0.516 |
| 12 | 0.198 | 0.22 | 0.204 | 0.378 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.744 | -0.844 | -0.666 | -0.05 |
| 02 | 0.767 | -0.922 | -1.118 | 0.116 |
| 03 | 0.822 | -0.099 | -0.864 | -0.923 |
| 04 | 1.311 | -1.345 | -6.553 | -3.521 |
| 05 | -6.553 | -6.553 | -6.553 | 1.385 |
| 06 | -6.553 | 1.385 | -6.553 | -6.553 |
| 07 | -6.553 | -6.553 | 1.385 | -6.553 |
| 08 | -3.83 | -6.553 | -2.294 | 1.355 |
| 09 | -0.982 | -5.36 | -5.011 | 1.285 |
| 10 | -0.424 | -2.478 | -2.172 | 1.147 |
| 11 | -0.286 | -0.534 | -0.515 | 0.725 |
| 12 | -0.232 | -0.127 | -0.205 | 0.413 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.686315 |
| 0.0005 | 4.28107 |
| 0.0001 | 7.208125 |