MotifHNF4G.H12INVIVO.0.P.B
Gene (human)HNF4G
(GeneCards)
Gene synonyms (human)NR2A2
Gene (mouse)Hnf4g
Gene synonyms (mouse)Nr2a2
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length15
ConsensushvRGdbCAAAGTYCW
GC content48.74%
Information content (bits; total / per base)16.781 / 1.119
Data sourcesChIP-Seq
Aligned words905

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (26) 0.954 0.993 0.917 0.987 0.937 0.99 4.015 6.464 328.815 750.137
Mouse 1 (7) 0.941 0.954 0.869 0.917 0.932 0.938 3.701 3.736 287.284 320.854
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familyRXR-related receptors {2.1.3} (TFClass)
TF subfamilyHNF4 (NR2A) {2.1.3.2} (TFClass)
TFClass IDTFClass: 2.1.3.2.2
HGNCHGNC:5026
MGIMGI:1353604
EntrezGene (human)GeneID:3174
(SSTAR profile)
EntrezGene (mouse)GeneID:30942
(SSTAR profile)
UniProt ID (human)HNF4G_HUMAN
UniProt ID (mouse)HNF4G_MOUSE
UniProt AC (human)Q14541
(TFClass)
UniProt AC (mouse)Q9WUU6
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01380.0186.0158.0181.0
02334.0133.0366.072.0
03490.022.0337.056.0
0455.015.0796.039.0
05111.036.0352.0406.0
0695.0363.0171.0276.0
071.0857.07.040.0
08885.00.019.01.0
09842.03.056.04.0
10883.00.021.01.0
111.01.0901.02.0
123.00.0111.0791.0
1327.0703.034.0141.0
141.0863.01.040.0
15726.032.073.074.0
PFM
ACGT
010.420.2060.1750.2
020.3690.1470.4040.08
030.5410.0240.3720.062
040.0610.0170.880.043
050.1230.040.3890.449
060.1050.4010.1890.305
070.0010.9470.0080.044
080.9780.00.0210.001
090.930.0030.0620.004
100.9760.00.0230.001
110.0010.0010.9960.002
120.0030.00.1230.874
130.030.7770.0380.156
140.0010.9540.0010.044
150.8020.0350.0810.082
PWM
ACGT
010.516-0.194-0.356-0.221
020.387-0.5260.478-1.129
030.769-2.2640.396-1.374
04-1.391-2.6141.253-1.723
05-0.704-1.7990.4390.581
06-0.8580.47-0.2780.197
07-4.4351.326-3.266-1.699
081.358-4.897-2.399-4.435
091.309-3.881-1.374-3.688
101.356-4.897-2.307-4.435
11-4.435-4.4351.376-4.12
12-3.881-4.897-0.7041.246
13-2.0721.129-1.854-0.468
14-4.4351.333-4.435-1.699
151.161-1.912-1.116-1.102
Standard thresholds
P-value Threshold
0.001 1.75806
0.0005 3.11256
0.0001 5.93896