HNF4G.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	HNF4G.H12INVIVO.0.P.B
Gene (human)	HNF4G (GeneCards)
Gene synonyms (human)	NR2A2
Gene (mouse)	Hnf4g
Gene synonyms (mouse)	Nr2a2
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	15
Consensus	hvRGdbCAAAGTYCW
GC content	48.74%
Information content (bits; total / per base)	16.781 / 1.119
Data sources	ChIP-Seq
Aligned words	905

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (26)	0.954	0.993	0.917	0.987	0.937	0.99	4.015	6.464	328.815	750.137
Mouse	1 (7)	0.941	0.954	0.869	0.917	0.932	0.938	3.701	3.736	287.284	320.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	Nuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF family	RXR-related receptors {2.1.3} (TFClass)
TF subfamily	HNF4 (NR2A) {2.1.3.2} (TFClass)
TFClass ID	TFClass: 2.1.3.2.2
HGNC	HGNC:5026
MGI	MGI:1353604
EntrezGene (human)	GeneID:3174 (SSTAR profile)
EntrezGene (mouse)	GeneID:30942 (SSTAR profile)
UniProt ID (human)	HNF4G_HUMAN
UniProt ID (mouse)	HNF4G_MOUSE
UniProt AC (human)	Q14541 (TFClass)
UniProt AC (mouse)	Q9WUU6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 1 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	HNF4G.H12INVIVO.0.P.B.pcm
PWM	HNF4G.H12INVIVO.0.P.B.pwm
PFM	HNF4G.H12INVIVO.0.P.B.pfm
Alignment	HNF4G.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	HNF4G.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	HNF4G.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	HNF4G.H12INVIVO.0.P.B_meme_format.meme
Transfac format	HNF4G.H12INVIVO.0.P.B_transfac_format.txt
Homer format	HNF4G.H12INVIVO.0.P.B_homer_format_0.001.txt HNF4G.H12INVIVO.0.P.B_homer_format_0.0005.txt HNF4G.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	380.0	186.0	158.0	181.0
02	334.0	133.0	366.0	72.0
03	490.0	22.0	337.0	56.0
04	55.0	15.0	796.0	39.0
05	111.0	36.0	352.0	406.0
06	95.0	363.0	171.0	276.0
07	1.0	857.0	7.0	40.0
08	885.0	0.0	19.0	1.0
09	842.0	3.0	56.0	4.0
10	883.0	0.0	21.0	1.0
11	1.0	1.0	901.0	2.0
12	3.0	0.0	111.0	791.0
13	27.0	703.0	34.0	141.0
14	1.0	863.0	1.0	40.0
15	726.0	32.0	73.0	74.0

PFM

	A	C	G	T
01	0.42	0.206	0.175	0.2
02	0.369	0.147	0.404	0.08
03	0.541	0.024	0.372	0.062
04	0.061	0.017	0.88	0.043
05	0.123	0.04	0.389	0.449
06	0.105	0.401	0.189	0.305
07	0.001	0.947	0.008	0.044
08	0.978	0.0	0.021	0.001
09	0.93	0.003	0.062	0.004
10	0.976	0.0	0.023	0.001
11	0.001	0.001	0.996	0.002
12	0.003	0.0	0.123	0.874
13	0.03	0.777	0.038	0.156
14	0.001	0.954	0.001	0.044
15	0.802	0.035	0.081	0.082

PWM

	A	C	G	T
01	0.516	-0.194	-0.356	-0.221
02	0.387	-0.526	0.478	-1.129
03	0.769	-2.264	0.396	-1.374
04	-1.391	-2.614	1.253	-1.723
05	-0.704	-1.799	0.439	0.581
06	-0.858	0.47	-0.278	0.197
07	-4.435	1.326	-3.266	-1.699
08	1.358	-4.897	-2.399	-4.435
09	1.309	-3.881	-1.374	-3.688
10	1.356	-4.897	-2.307	-4.435
11	-4.435	-4.435	1.376	-4.12
12	-3.881	-4.897	-0.704	1.246
13	-2.072	1.129	-1.854	-0.468
14	-4.435	1.333	-4.435	-1.699
15	1.161	-1.912	-1.116	-1.102

Standard thresholds

P-value	Threshold
0.001	1.75806
0.0005	3.11256
0.0001	5.93896