| Motif | HMX1.H12INVITRO.0.SM.B |
| Gene (human) | HMX1 (GeneCards) |
| Gene synonyms (human) | H6 |
| Gene (mouse) | Hmx1 |
| Gene synonyms (mouse) | H6 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | HMX1.H12INVITRO.0.SM.B |
| Gene (human) | HMX1 (GeneCards) |
| Gene synonyms (human) | H6 |
| Gene (mouse) | Hmx1 |
| Gene synonyms (mouse) | H6 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 10 |
| Consensus | nYTAAKTGnn |
| GC content | 36.1% |
| Information content (bits; total / per base) | 9.904 / 0.99 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 8729 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.843 | 0.803 | 0.778 | 0.748 | 0.718 | 0.7 |
| best | 0.948 | 0.914 | 0.924 | 0.885 | 0.863 | 0.824 | |
| Methyl HT-SELEX, 1 experiments | median | 0.948 | 0.914 | 0.924 | 0.885 | 0.857 | 0.824 |
| best | 0.948 | 0.914 | 0.924 | 0.885 | 0.857 | 0.824 | |
| Non-Methyl HT-SELEX, 3 experiments | median | 0.753 | 0.711 | 0.647 | 0.631 | 0.579 | 0.581 |
| best | 0.933 | 0.896 | 0.91 | 0.864 | 0.863 | 0.818 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.732 | 0.479 | 0.743 | 0.55 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | NK-related {3.1.2} (TFClass) |
| TF subfamily | NK5-HMX {3.1.2.18} (TFClass) |
| TFClass ID | TFClass: 3.1.2.18.1 |
| HGNC | HGNC:5017 |
| MGI | MGI:107178 |
| EntrezGene (human) | GeneID:3166 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15371 (SSTAR profile) |
| UniProt ID (human) | HMX1_HUMAN |
| UniProt ID (mouse) | HMX1_MOUSE |
| UniProt AC (human) | Q9NP08 (TFClass) |
| UniProt AC (mouse) | O70218 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 3 |
| Methyl-HT-SELEX | 1 |
| PCM | HMX1.H12INVITRO.0.SM.B.pcm |
| PWM | HMX1.H12INVITRO.0.SM.B.pwm |
| PFM | HMX1.H12INVITRO.0.SM.B.pfm |
| Alignment | HMX1.H12INVITRO.0.SM.B.words.tsv |
| Threshold to P-value map | HMX1.H12INVITRO.0.SM.B.thr |
| Motif in other formats | |
| JASPAR format | HMX1.H12INVITRO.0.SM.B_jaspar_format.txt |
| MEME format | HMX1.H12INVITRO.0.SM.B_meme_format.meme |
| Transfac format | HMX1.H12INVITRO.0.SM.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2249.0 | 2290.0 | 2655.0 | 1535.0 |
| 02 | 994.5 | 1107.5 | 1082.5 | 5544.5 |
| 03 | 282.0 | 1569.0 | 11.0 | 6867.0 |
| 04 | 8725.0 | 0.0 | 4.0 | 0.0 |
| 05 | 8729.0 | 0.0 | 0.0 | 0.0 |
| 06 | 1.0 | 7.0 | 3951.0 | 4770.0 |
| 07 | 0.0 | 1080.0 | 1.0 | 7648.0 |
| 08 | 313.0 | 6.0 | 8380.0 | 30.0 |
| 09 | 1926.75 | 2968.75 | 2428.75 | 1404.75 |
| 10 | 1591.75 | 2229.75 | 1738.75 | 3168.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.258 | 0.262 | 0.304 | 0.176 |
| 02 | 0.114 | 0.127 | 0.124 | 0.635 |
| 03 | 0.032 | 0.18 | 0.001 | 0.787 |
| 04 | 1.0 | 0.0 | 0.0 | 0.0 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.001 | 0.453 | 0.546 |
| 07 | 0.0 | 0.124 | 0.0 | 0.876 |
| 08 | 0.036 | 0.001 | 0.96 | 0.003 |
| 09 | 0.221 | 0.34 | 0.278 | 0.161 |
| 10 | 0.182 | 0.255 | 0.199 | 0.363 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.03 | 0.048 | 0.196 | -0.351 |
| 02 | -0.785 | -0.677 | -0.7 | 0.932 |
| 03 | -2.039 | -0.33 | -5.104 | 1.146 |
| 04 | 1.385 | -6.87 | -5.854 | -6.87 |
| 05 | 1.386 | -6.87 | -6.87 | -6.87 |
| 06 | -6.505 | -5.463 | 0.593 | 0.781 |
| 07 | -6.87 | -0.702 | -6.505 | 1.253 |
| 08 | -1.936 | -5.577 | 1.345 | -4.215 |
| 09 | -0.124 | 0.308 | 0.107 | -0.44 |
| 10 | -0.315 | 0.022 | -0.227 | 0.373 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.05766 |
| 0.0005 | 6.21019 |
| 0.0001 | 7.62561 |