| Motif | HMGA1.H12INVITRO.0.P.D |
| Gene (human) | HMGA1 (GeneCards) |
| Gene synonyms (human) | HMGIY |
| Gene (mouse) | Hmga1 |
| Gene synonyms (mouse) | Hmgi, Hmgiy |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HMGA1.H12INVITRO.0.P.D |
| Gene (human) | HMGA1 (GeneCards) |
| Gene synonyms (human) | HMGIY |
| Gene (mouse) | Hmga1 |
| Gene synonyms (mouse) | Hmgi, Hmgiy |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | TWWAATAdAWW |
| GC content | 9.36% |
| Information content (bits; total / per base) | 12.369 / 1.124 |
| Data sources | ChIP-Seq |
| Aligned words | 992 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (10) | 0.841 | 0.915 | 0.75 | 0.851 | 0.708 | 0.814 | 2.144 | 2.706 | 79.489 | 149.26 |
| TF superclass | beta-Sheet binding to DNA {8} (TFClass) |
| TF class | A.T hook factors {8.2} (TFClass) |
| TF family | HMGA {8.2.1} (TFClass) |
| TF subfamily | {8.2.1.0} (TFClass) |
| TFClass ID | TFClass: 8.2.1.0.1 |
| HGNC | HGNC:5010 |
| MGI | MGI:96160 |
| EntrezGene (human) | GeneID:3159 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:111241 (SSTAR profile) GeneID:15361 (SSTAR profile) |
| UniProt ID (human) | HMGA1_HUMAN |
| UniProt ID (mouse) | HMGA1_MOUSE |
| UniProt AC (human) | P17096 (TFClass) |
| UniProt AC (mouse) | P17095 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | HMGA1.H12INVITRO.0.P.D.pcm |
| PWM | HMGA1.H12INVITRO.0.P.D.pwm |
| PFM | HMGA1.H12INVITRO.0.P.D.pfm |
| Alignment | HMGA1.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | HMGA1.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | HMGA1.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | HMGA1.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | HMGA1.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 180.0 | 14.0 | 16.0 | 782.0 |
| 02 | 610.0 | 118.0 | 86.0 | 178.0 |
| 03 | 525.0 | 10.0 | 165.0 | 292.0 |
| 04 | 976.0 | 12.0 | 1.0 | 3.0 |
| 05 | 966.0 | 3.0 | 23.0 | 0.0 |
| 06 | 2.0 | 1.0 | 9.0 | 980.0 |
| 07 | 724.0 | 8.0 | 240.0 | 20.0 |
| 08 | 320.0 | 89.0 | 149.0 | 434.0 |
| 09 | 981.0 | 3.0 | 3.0 | 5.0 |
| 10 | 441.0 | 16.0 | 34.0 | 501.0 |
| 11 | 613.0 | 14.0 | 7.0 | 358.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.181 | 0.014 | 0.016 | 0.788 |
| 02 | 0.615 | 0.119 | 0.087 | 0.179 |
| 03 | 0.529 | 0.01 | 0.166 | 0.294 |
| 04 | 0.984 | 0.012 | 0.001 | 0.003 |
| 05 | 0.974 | 0.003 | 0.023 | 0.0 |
| 06 | 0.002 | 0.001 | 0.009 | 0.988 |
| 07 | 0.73 | 0.008 | 0.242 | 0.02 |
| 08 | 0.323 | 0.09 | 0.15 | 0.438 |
| 09 | 0.989 | 0.003 | 0.003 | 0.005 |
| 10 | 0.445 | 0.016 | 0.034 | 0.505 |
| 11 | 0.618 | 0.014 | 0.007 | 0.361 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.318 | -2.765 | -2.645 | 1.144 |
| 02 | 0.896 | -0.735 | -1.046 | -0.329 |
| 03 | 0.746 | -3.059 | -0.404 | 0.162 |
| 04 | 1.365 | -2.901 | -4.518 | -3.968 |
| 05 | 1.355 | -3.968 | -2.313 | -4.975 |
| 06 | -4.205 | -4.518 | -3.148 | 1.369 |
| 07 | 1.067 | -3.246 | -0.033 | -2.442 |
| 08 | 0.253 | -1.013 | -0.505 | 0.557 |
| 09 | 1.37 | -3.968 | -3.968 | -3.615 |
| 10 | 0.573 | -2.645 | -1.945 | 0.7 |
| 11 | 0.901 | -2.765 | -3.354 | 0.365 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.814915 |
| 0.0005 | 4.90293 |
| 0.0001 | 7.341645 |