HINFP.H12INVIVO.2.S.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	HINFP.H12INVIVO.2.S.B
Gene (human)	HINFP (GeneCards)
Gene synonyms (human)	MIZF, ZNF743
Gene (mouse)	Hinfp
Gene synonyms (mouse)	Mizf
LOGO
LOGO (reverse complement)
Motif subtype	2
Quality	B

Motif length	11
Consensus	hGCGGACSbnv
GC content	71.19%
Information content (bits; total / per base)	11.601 / 1.055
Data sources	HT-SELEX
Aligned words	2491

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.674	0.738	0.545	0.642	0.573	0.711	1.613	2.146	24.131	154.032

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.613	0.641	0.529	0.562	0.5	0.528
Non-Methyl HT-SELEX, 2 experiments	best	0.667	0.696	0.551	0.589	0.509	0.543

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	HINFP-like {2.3.4.21} (TFClass)
TFClass ID	TFClass: 2.3.4.21.1
HGNC	HGNC:17850
MGI	MGI:2429620
EntrezGene (human)	GeneID:25988 (SSTAR profile)
EntrezGene (mouse)	GeneID:102423 (SSTAR profile)
UniProt ID (human)	HINFP_HUMAN
UniProt ID (mouse)	HINFP_MOUSE
UniProt AC (human)	Q9BQA5 (TFClass)
UniProt AC (mouse)	Q8K1K9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	HINFP.H12INVIVO.2.S.B.pcm
PWM	HINFP.H12INVIVO.2.S.B.pwm
PFM	HINFP.H12INVIVO.2.S.B.pfm
Alignment	HINFP.H12INVIVO.2.S.B.words.tsv
Threshold to P-value map	HINFP.H12INVIVO.2.S.B.thr
Motif in other formats
JASPAR format	HINFP.H12INVIVO.2.S.B_jaspar_format.txt
MEME format	HINFP.H12INVIVO.2.S.B_meme_format.meme
Transfac format	HINFP.H12INVIVO.2.S.B_transfac_format.txt
Homer format	HINFP.H12INVIVO.2.S.B_homer_format_0.001.txt HINFP.H12INVIVO.2.S.B_homer_format_0.0005.txt HINFP.H12INVIVO.2.S.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	530.0	1049.0	439.0	473.0
02	218.75	107.75	2079.75	84.75
03	39.0	2395.0	39.0	18.0
04	6.0	1.0	2474.0	10.0
05	3.0	4.0	2481.0	3.0
06	2487.0	0.0	1.0	3.0
07	16.0	2434.0	15.0	26.0
08	104.0	716.0	1549.0	122.0
09	280.0	837.0	371.0	1003.0
10	530.0	391.0	657.0	913.0
11	655.5	469.5	996.5	369.5

PFM

	A	C	G	T
01	0.213	0.421	0.176	0.19
02	0.088	0.043	0.835	0.034
03	0.016	0.961	0.016	0.007
04	0.002	0.0	0.993	0.004
05	0.001	0.002	0.996	0.001
06	0.998	0.0	0.0	0.001
07	0.006	0.977	0.006	0.01
08	0.042	0.287	0.622	0.049
09	0.112	0.336	0.149	0.403
10	0.213	0.157	0.264	0.367
11	0.263	0.188	0.4	0.148

PWM

	A	C	G	T
01	-0.161	0.52	-0.348	-0.274
02	-1.04	-1.739	1.204	-1.975
03	-2.725	1.345	-2.725	-3.444
04	-4.363	-5.354	1.377	-3.956
05	-4.837	-4.653	1.38	-4.837
06	1.382	-5.767	-5.354	-4.837
07	-3.549	1.361	-3.607	-3.107
08	-1.774	0.139	0.909	-1.617
09	-0.796	0.295	-0.516	0.475
10	-0.161	-0.464	0.053	0.382
11	0.051	-0.281	0.469	-0.52

Standard thresholds

P-value	Threshold
0.001	3.95646
0.0005	5.17585
0.0001	7.609625