HINFP.H12INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	HINFP.H12INVIVO.1.P.B
Gene (human)	HINFP (GeneCards)
Gene synonyms (human)	MIZF, ZNF743
Gene (mouse)	Hinfp
Gene synonyms (mouse)	Mizf
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	11
Consensus	vSMGGASYbvR
GC content	69.99%
Information content (bits; total / per base)	8.535 / 0.776
Data sources	ChIP-Seq
Aligned words	113

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.691	0.758	0.525	0.587	0.637	0.764	1.759	2.472	17.602	110.076

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.556	0.564	0.5	0.523	0.485	0.506
Non-Methyl HT-SELEX, 2 experiments	best	0.604	0.606	0.521	0.545	0.495	0.519

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	HINFP-like {2.3.4.21} (TFClass)
TFClass ID	TFClass: 2.3.4.21.1
HGNC	HGNC:17850
MGI	MGI:2429620
EntrezGene (human)	GeneID:25988 (SSTAR profile)
EntrezGene (mouse)	GeneID:102423 (SSTAR profile)
UniProt ID (human)	HINFP_HUMAN
UniProt ID (mouse)	HINFP_MOUSE
UniProt AC (human)	Q9BQA5 (TFClass)
UniProt AC (mouse)	Q8K1K9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	HINFP.H12INVIVO.1.P.B.pcm
PWM	HINFP.H12INVIVO.1.P.B.pwm
PFM	HINFP.H12INVIVO.1.P.B.pfm
Alignment	HINFP.H12INVIVO.1.P.B.words.tsv
Threshold to P-value map	HINFP.H12INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	HINFP.H12INVIVO.1.P.B_jaspar_format.txt
MEME format	HINFP.H12INVIVO.1.P.B_meme_format.meme
Transfac format	HINFP.H12INVIVO.1.P.B_transfac_format.txt
Homer format	HINFP.H12INVIVO.1.P.B_homer_format_0.001.txt HINFP.H12INVIVO.1.P.B_homer_format_0.0005.txt HINFP.H12INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	35.0	25.0	40.0	13.0
02	17.0	40.0	54.0	2.0
03	27.0	73.0	2.0	11.0
04	6.0	0.0	106.0	1.0
05	1.0	3.0	109.0	0.0
06	112.0	0.0	0.0	1.0
07	15.0	63.0	33.0	2.0
08	5.0	72.0	15.0	21.0
09	7.0	50.0	37.0	19.0
10	20.0	29.0	54.0	10.0
11	37.0	6.0	59.0	11.0

PFM

	A	C	G	T
01	0.31	0.221	0.354	0.115
02	0.15	0.354	0.478	0.018
03	0.239	0.646	0.018	0.097
04	0.053	0.0	0.938	0.009
05	0.009	0.027	0.965	0.0
06	0.991	0.0	0.0	0.009
07	0.133	0.558	0.292	0.018
08	0.044	0.637	0.133	0.186
09	0.062	0.442	0.327	0.168
10	0.177	0.257	0.478	0.088
11	0.327	0.053	0.522	0.097

PWM

	A	C	G	T
01	0.206	-0.117	0.336	-0.73
02	-0.482	0.336	0.629	-2.225
03	-0.043	0.924	-2.225	-0.882
04	-1.411	-3.215	1.292	-2.602
05	-2.602	-1.951	1.32	-3.215
06	1.347	-3.215	-3.215	-2.602
07	-0.598	0.78	0.15	-2.225
08	-1.56	0.911	-0.598	-0.283
09	-1.28	0.553	0.26	-0.377
10	-0.329	0.025	0.629	-0.968
11	0.26	-1.411	0.715	-0.882

Standard thresholds

P-value	Threshold
0.001	5.147335
0.0005	5.82854
0.0001	7.09298