HINFP.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	HINFP.H12INVIVO.0.P.B
Gene (human)	HINFP (GeneCards)
Gene synonyms (human)	MIZF, ZNF743
Gene (mouse)	Hinfp
Gene synonyms (mouse)	Mizf
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	20
Consensus	vCGGACYbvRddGRRRMChS
GC content	65.61%
Information content (bits; total / per base)	16.857 / 0.843
Data sources	ChIP-Seq
Aligned words	123

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.731	0.852	0.693	0.823	0.698	0.863	3.488	5.674	44.432	246.051

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.52	0.534	0.508	0.515	0.504	0.508
Non-Methyl HT-SELEX, 2 experiments	best	0.539	0.557	0.515	0.526	0.507	0.514

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	HINFP-like {2.3.4.21} (TFClass)
TFClass ID	TFClass: 2.3.4.21.1
HGNC	HGNC:17850
MGI	MGI:2429620
EntrezGene (human)	GeneID:25988 (SSTAR profile)
EntrezGene (mouse)	GeneID:102423 (SSTAR profile)
UniProt ID (human)	HINFP_HUMAN
UniProt ID (mouse)	HINFP_MOUSE
UniProt AC (human)	Q9BQA5 (TFClass)
UniProt AC (mouse)	Q8K1K9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	HINFP.H12INVIVO.0.P.B.pcm
PWM	HINFP.H12INVIVO.0.P.B.pwm
PFM	HINFP.H12INVIVO.0.P.B.pfm
Alignment	HINFP.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	HINFP.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	HINFP.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	HINFP.H12INVIVO.0.P.B_meme_format.meme
Transfac format	HINFP.H12INVIVO.0.P.B_transfac_format.txt
Homer format	HINFP.H12INVIVO.0.P.B_homer_format_0.001.txt HINFP.H12INVIVO.0.P.B_homer_format_0.0005.txt HINFP.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	24.0	32.0	61.0	6.0
02	14.0	99.0	6.0	4.0
03	2.0	6.0	114.0	1.0
04	3.0	3.0	117.0	0.0
05	116.0	3.0	4.0	0.0
06	4.0	111.0	8.0	0.0
07	4.0	94.0	12.0	13.0
08	16.0	48.0	35.0	24.0
09	42.0	21.0	49.0	11.0
10	47.0	4.0	62.0	10.0
11	16.0	9.0	82.0	16.0
12	45.0	11.0	16.0	51.0
13	0.0	0.0	123.0	0.0
14	73.0	4.0	42.0	4.0
15	40.0	9.0	72.0	2.0
16	51.0	8.0	63.0	1.0
17	71.0	26.0	24.0	2.0
18	16.0	103.0	3.0	1.0
19	54.0	17.0	9.0	43.0
20	8.0	16.0	88.0	11.0

PFM

	A	C	G	T
01	0.195	0.26	0.496	0.049
02	0.114	0.805	0.049	0.033
03	0.016	0.049	0.927	0.008
04	0.024	0.024	0.951	0.0
05	0.943	0.024	0.033	0.0
06	0.033	0.902	0.065	0.0
07	0.033	0.764	0.098	0.106
08	0.13	0.39	0.285	0.195
09	0.341	0.171	0.398	0.089
10	0.382	0.033	0.504	0.081
11	0.13	0.073	0.667	0.13
12	0.366	0.089	0.13	0.415
13	0.0	0.0	1.0	0.0
14	0.593	0.033	0.341	0.033
15	0.325	0.073	0.585	0.016
16	0.415	0.065	0.512	0.008
17	0.577	0.211	0.195	0.016
18	0.13	0.837	0.024	0.008
19	0.439	0.138	0.073	0.35
20	0.065	0.13	0.715	0.089

PWM

	A	C	G	T
01	-0.237	0.038	0.666	-1.49
02	-0.743	1.143	-1.49	-1.815
03	-2.3	-1.49	1.282	-2.674
04	-2.028	-2.028	1.308	-3.279
05	1.3	-2.028	-1.815	-3.279
06	-1.815	1.256	-1.245	-3.279
07	-1.815	1.092	-0.884	-0.811
08	-0.619	0.432	0.125	-0.237
09	0.302	-0.364	0.452	-0.963
10	0.411	-1.815	0.682	-1.048
11	-0.619	-1.142	0.957	-0.619
12	0.369	-0.963	-0.619	0.491
13	-3.279	-3.279	1.358	-3.279
14	0.843	-1.815	0.302	-1.815
15	0.254	-1.142	0.829	-2.3
16	0.491	-1.245	0.698	-2.674
17	0.815	-0.161	-0.237	-2.3
18	-0.619	1.182	-2.028	-2.674
19	0.547	-0.563	-1.142	0.325
20	-1.245	-0.619	1.027	-0.963

Standard thresholds

P-value	Threshold
0.001	3.05881
0.0005	4.15581
0.0001	6.47176