| Motif | HIF3A.H12RSNP.1.P.D |
| Gene (human) | HIF3A (GeneCards) |
| Gene synonyms (human) | BHLHE17, MOP7, PASD7 |
| Gene (mouse) | Hif3a |
| Gene synonyms (mouse) | Mop7, Nepas |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | HIF3A.H12RSNP.1.P.D |
| Gene (human) | HIF3A (GeneCards) |
| Gene synonyms (human) | BHLHE17, MOP7, PASD7 |
| Gene (mouse) | Hif3a |
| Gene synonyms (mouse) | Mop7, Nepas |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 8 |
| Consensus | vdACGTGM |
| GC content | 62.04% |
| Information content (bits; total / per base) | 9.397 / 1.175 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (5) | 0.913 | 0.92 | 0.814 | 0.83 | 0.828 | 0.857 | 2.567 | 2.746 | 414.658 | 433.187 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | PAS {1.2.5} (TFClass) |
| TF subfamily | PAS-AHR {1.2.5.1} (TFClass) |
| TFClass ID | TFClass: 1.2.5.1.6 |
| HGNC | HGNC:15825 |
| MGI | MGI:1859778 |
| EntrezGene (human) | GeneID:64344 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:53417 (SSTAR profile) |
| UniProt ID (human) | HIF3A_HUMAN |
| UniProt ID (mouse) | HIF3A_MOUSE |
| UniProt AC (human) | Q9Y2N7 (TFClass) |
| UniProt AC (mouse) | Q0VBL6 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | HIF3A.H12RSNP.1.P.D.pcm |
| PWM | HIF3A.H12RSNP.1.P.D.pwm |
| PFM | HIF3A.H12RSNP.1.P.D.pfm |
| Alignment | HIF3A.H12RSNP.1.P.D.words.tsv |
| Threshold to P-value map | HIF3A.H12RSNP.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | HIF3A.H12RSNP.1.P.D_jaspar_format.txt |
| MEME format | HIF3A.H12RSNP.1.P.D_meme_format.meme |
| Transfac format | HIF3A.H12RSNP.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 194.0 | 228.0 | 528.0 | 50.0 |
| 02 | 170.0 | 133.0 | 285.0 | 412.0 |
| 03 | 761.0 | 26.0 | 199.0 | 14.0 |
| 04 | 1.0 | 964.0 | 2.0 | 33.0 |
| 05 | 16.0 | 15.0 | 966.0 | 3.0 |
| 06 | 0.0 | 1.0 | 1.0 | 998.0 |
| 07 | 2.0 | 0.0 | 997.0 | 1.0 |
| 08 | 272.0 | 566.0 | 52.0 | 110.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.194 | 0.228 | 0.528 | 0.05 |
| 02 | 0.17 | 0.133 | 0.285 | 0.412 |
| 03 | 0.761 | 0.026 | 0.199 | 0.014 |
| 04 | 0.001 | 0.964 | 0.002 | 0.033 |
| 05 | 0.016 | 0.015 | 0.966 | 0.003 |
| 06 | 0.0 | 0.001 | 0.001 | 0.998 |
| 07 | 0.002 | 0.0 | 0.997 | 0.001 |
| 08 | 0.272 | 0.566 | 0.052 | 0.11 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.252 | -0.091 | 0.744 | -1.582 |
| 02 | -0.382 | -0.625 | 0.13 | 0.497 |
| 03 | 1.109 | -2.206 | -0.226 | -2.773 |
| 04 | -4.525 | 1.345 | -4.213 | -1.981 |
| 05 | -2.653 | -2.711 | 1.347 | -3.975 |
| 06 | -4.982 | -4.525 | -4.525 | 1.379 |
| 07 | -4.213 | -4.982 | 1.378 | -4.525 |
| 08 | 0.084 | 0.813 | -1.544 | -0.812 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.175335 |
| 0.0005 | 6.153535 |
| 0.0001 | 7.50886 |