MotifHIF3A.H12INVIVO.0.P.C
Gene (human)HIF3A
(GeneCards)
Gene synonyms (human)BHLHE17, MOP7, PASD7
Gene (mouse)Hif3a
Gene synonyms (mouse)Mop7, Nepas
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length18
ConsensusdRCGTGhbnvnnnbSRbv
GC content61.2%
Information content (bits; total / per base)10.983 / 0.61
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.93 0.934 0.863 0.871 0.883 0.901 3.625 3.815 460.0 488.0
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyPAS {1.2.5} (TFClass)
TF subfamilyPAS-AHR {1.2.5.1} (TFClass)
TFClass IDTFClass: 1.2.5.1.6
HGNCHGNC:15825
MGIMGI:1859778
EntrezGene (human)GeneID:64344
(SSTAR profile)
EntrezGene (mouse)GeneID:53417
(SSTAR profile)
UniProt ID (human)HIF3A_HUMAN
UniProt ID (mouse)HIF3A_MOUSE
UniProt AC (human)Q9Y2N7
(TFClass)
UniProt AC (mouse)Q0VBL6
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01154.0123.0296.0427.0
02729.039.0217.015.0
031.0949.01.049.0
0422.013.0961.04.0
057.02.03.0988.0
061.02.0996.01.0
07245.0545.074.0136.0
08166.0383.0272.0179.0
09153.0244.0265.0338.0
10212.0188.0431.0169.0
11189.0264.0286.0261.0
12162.0299.0339.0200.0
13200.0264.0301.0235.0
14157.0166.0468.0209.0
1582.0717.0154.047.0
16595.0133.0209.063.0
1790.0465.0242.0203.0
18205.0125.0580.090.0
PFM
ACGT
010.1540.1230.2960.427
020.7290.0390.2170.015
030.0010.9490.0010.049
040.0220.0130.9610.004
050.0070.0020.0030.988
060.0010.0020.9960.001
070.2450.5450.0740.136
080.1660.3830.2720.179
090.1530.2440.2650.338
100.2120.1880.4310.169
110.1890.2640.2860.261
120.1620.2990.3390.2
130.20.2640.3010.235
140.1570.1660.4680.209
150.0820.7170.1540.047
160.5950.1330.2090.063
170.090.4650.2420.203
180.2050.1250.580.09
PWM
ACGT
01-0.48-0.7020.1680.532
021.066-1.821-0.141-2.711
03-4.5251.329-4.525-1.602
04-2.362-2.8391.341-3.783
05-3.362-4.213-3.9751.369
06-4.525-4.2131.377-4.525
07-0.020.776-1.201-0.603
08-0.4060.4240.084-0.331
09-0.487-0.0240.0580.3
10-0.164-0.2830.542-0.388
11-0.2780.0540.1340.043
12-0.430.1780.303-0.221
13-0.2210.0540.184-0.061
14-0.461-0.4060.624-0.178
15-1.1011.049-0.48-1.642
160.863-0.625-0.178-1.358
17-1.010.617-0.032-0.207
18-0.197-0.6860.838-1.01
Standard thresholds
P-value Threshold
0.001 4.54511
0.0005 5.52756
0.0001 7.38591