MotifHIF3A.H12INVITRO.1.P.D
Gene (human)HIF3A
(GeneCards)
Gene synonyms (human)BHLHE17, MOP7, PASD7
Gene (mouse)Hif3a
Gene synonyms (mouse)Mop7, Nepas
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length8
ConsensusvdACGTGM
GC content62.04%
Information content (bits; total / per base)9.397 / 1.175
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.913 0.92 0.814 0.83 0.828 0.857 2.567 2.746 414.658 433.187
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyPAS {1.2.5} (TFClass)
TF subfamilyPAS-AHR {1.2.5.1} (TFClass)
TFClass IDTFClass: 1.2.5.1.6
HGNCHGNC:15825
MGIMGI:1859778
EntrezGene (human)GeneID:64344
(SSTAR profile)
EntrezGene (mouse)GeneID:53417
(SSTAR profile)
UniProt ID (human)HIF3A_HUMAN
UniProt ID (mouse)HIF3A_MOUSE
UniProt AC (human)Q9Y2N7
(TFClass)
UniProt AC (mouse)Q0VBL6
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01194.0228.0528.050.0
02170.0133.0285.0412.0
03761.026.0199.014.0
041.0964.02.033.0
0516.015.0966.03.0
060.01.01.0998.0
072.00.0997.01.0
08272.0566.052.0110.0
PFM
ACGT
010.1940.2280.5280.05
020.170.1330.2850.412
030.7610.0260.1990.014
040.0010.9640.0020.033
050.0160.0150.9660.003
060.00.0010.0010.998
070.0020.00.9970.001
080.2720.5660.0520.11
PWM
ACGT
01-0.252-0.0910.744-1.582
02-0.382-0.6250.130.497
031.109-2.206-0.226-2.773
04-4.5251.345-4.213-1.981
05-2.653-2.7111.347-3.975
06-4.982-4.525-4.5251.379
07-4.213-4.9821.378-4.525
080.0840.813-1.544-0.812
Standard thresholds
P-value Threshold
0.001 5.175335
0.0005 6.153535
0.0001 7.50886