HIC2.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	HIC2.H12INVIVO.0.P.B
Gene (human)	HIC2 (GeneCards)
Gene synonyms (human)	HRG22, KIAA1020, ZBTB30
Gene (mouse)	Hic2
Gene synonyms (mouse)	Kiaa1020
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	8
Consensus	vMTKCCWv
GC content	58.63%
Information content (bits; total / per base)	7.216 / 0.902
Data sources	ChIP-Seq
Aligned words	471

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	2 (10)	0.735	0.749	0.591	0.595	0.632	0.643	1.361	1.38	27.398	32.509

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	HIC {2.3.4.17} (TFClass)
TFClass ID	TFClass: 2.3.4.17.2
HGNC	HGNC:18595
MGI	MGI:1929869
EntrezGene (human)	GeneID:23119 (SSTAR profile)
EntrezGene (mouse)	GeneID:58180 (SSTAR profile)
UniProt ID (human)	HIC2_HUMAN
UniProt ID (mouse)	HIC2_MOUSE
UniProt AC (human)	Q96JB3 (TFClass)
UniProt AC (mouse)	Q9JLZ6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	HIC2.H12INVIVO.0.P.B.pcm
PWM	HIC2.H12INVIVO.0.P.B.pwm
PFM	HIC2.H12INVIVO.0.P.B.pfm
Alignment	HIC2.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	HIC2.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	HIC2.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	HIC2.H12INVIVO.0.P.B_meme_format.meme
Transfac format	HIC2.H12INVIVO.0.P.B_transfac_format.txt
Homer format	HIC2.H12INVIVO.0.P.B_homer_format_0.001.txt HIC2.H12INVIVO.0.P.B_homer_format_0.0005.txt HIC2.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	96.0	212.0	130.0	33.0
02	228.0	182.0	33.0	28.0
03	29.0	15.0	23.0	404.0
04	9.0	12.0	274.0	176.0
05	7.0	459.0	0.0	5.0
06	3.0	462.0	0.0	6.0
07	216.0	60.0	1.0	194.0
08	85.0	78.0	268.0	40.0

PFM

	A	C	G	T
01	0.204	0.45	0.276	0.07
02	0.484	0.386	0.07	0.059
03	0.062	0.032	0.049	0.858
04	0.019	0.025	0.582	0.374
05	0.015	0.975	0.0	0.011
06	0.006	0.981	0.0	0.013
07	0.459	0.127	0.002	0.412
08	0.18	0.166	0.569	0.085

PWM

	A	C	G	T
01	-0.201	0.582	0.098	-1.239
02	0.655	0.431	-1.239	-1.396
03	-1.363	-1.976	-1.581	1.224
04	-2.426	-2.176	0.837	0.398
05	-2.637	1.351	-4.351	-2.904
06	-3.269	1.357	-4.351	-2.761
07	0.601	-0.662	-3.85	0.494
08	-0.321	-0.405	0.815	-1.055

Standard thresholds

P-value	Threshold
0.001	5.367645
0.0005	5.873495
0.0001	6.85893