HES7.H12CORE.0.S.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	HES7.H12CORE.0.S.B
Gene (human)	HES7 (GeneCards)
Gene synonyms (human)	BHLHB37
Gene (mouse)	Hes7
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	10
Consensus	nvRCACGTRn
GC content	61.59%
Information content (bits; total / per base)	10.389 / 1.039
Data sources	HT-SELEX
Aligned words	2156

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.805	0.807	0.781	0.78	0.768	0.767
Non-Methyl HT-SELEX, 2 experiments	best	0.998	0.997	0.997	0.995	0.994	0.992

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	Hairy-related {1.2.4} (TFClass)
TF subfamily	HAIRY {1.2.4.1} (TFClass)
TFClass ID	TFClass: 1.2.4.1.7
HGNC	HGNC:15977
MGI	MGI:2135679
EntrezGene (human)	GeneID:84667 (SSTAR profile)
EntrezGene (mouse)	GeneID:84653 (SSTAR profile)
UniProt ID (human)	HES7_HUMAN
UniProt ID (mouse)	HES7_MOUSE
UniProt AC (human)	Q9BYE0 (TFClass)
UniProt AC (mouse)	Q8BKT2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	HES7.H12CORE.0.S.B.pcm
PWM	HES7.H12CORE.0.S.B.pwm
PFM	HES7.H12CORE.0.S.B.pfm
Alignment	HES7.H12CORE.0.S.B.words.tsv
Threshold to P-value map	HES7.H12CORE.0.S.B.thr
Motif in other formats
JASPAR format	HES7.H12CORE.0.S.B_jaspar_format.txt
MEME format	HES7.H12CORE.0.S.B_meme_format.meme
Transfac format	HES7.H12CORE.0.S.B_transfac_format.txt
Homer format	HES7.H12CORE.0.S.B_homer_format_0.001.txt HES7.H12CORE.0.S.B_homer_format_0.0005.txt HES7.H12CORE.0.S.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	530.0	601.0	404.0	621.0
02	350.0	279.0	1275.0	252.0
03	655.0	116.0	1355.0	30.0
04	101.0	2043.0	12.0	0.0
05	2156.0	0.0	0.0	0.0
06	0.0	2155.0	0.0	1.0
07	29.0	2.0	2113.0	12.0
08	124.25	134.25	85.25	1812.25
09	324.75	158.75	1434.75	237.75
10	336.5	573.5	537.5	708.5

PFM

	A	C	G	T
01	0.246	0.279	0.187	0.288
02	0.162	0.129	0.591	0.117
03	0.304	0.054	0.628	0.014
04	0.047	0.948	0.006	0.0
05	1.0	0.0	0.0	0.0
06	0.0	1.0	0.0	0.0
07	0.013	0.001	0.98	0.006
08	0.058	0.062	0.04	0.841
09	0.151	0.074	0.665	0.11
10	0.156	0.266	0.249	0.329

PWM

	A	C	G	T
01	-0.017	0.109	-0.287	0.141
02	-0.43	-0.655	0.859	-0.756
03	0.194	-1.523	0.92	-2.83
04	-1.659	1.33	-3.66	-5.641
05	1.384	-5.641	-5.641	-5.641
06	-5.641	1.383	-5.641	-5.222
07	-2.862	-4.927	1.364	-3.66
08	-1.456	-1.379	-1.825	1.21
09	-0.504	-1.214	0.977	-0.814
10	-0.469	0.062	-0.003	0.273

Standard thresholds

P-value	Threshold
0.001	4.77753
0.0005	5.712825
0.0001	7.57598