| Motif | HES2.H12INVIVO.0.S.D |
| Gene (human) | HES2 (GeneCards) |
| Gene synonyms (human) | BHLHB40 |
| Gene (mouse) | Hes2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HES2.H12INVIVO.0.S.D |
| Gene (human) | HES2 (GeneCards) |
| Gene synonyms (human) | BHLHB40 |
| Gene (mouse) | Hes2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 14 |
| Consensus | nnhGGCACGTGbbn |
| GC content | 64.51% |
| Information content (bits; total / per base) | 15.576 / 1.113 |
| Data sources | HT-SELEX |
| Aligned words | 9901 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.998 | 0.997 | 0.996 | 0.995 | 0.986 | 0.982 |
| best | 0.998 | 0.997 | 0.996 | 0.995 | 0.986 | 0.982 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.911 | 0.83 | 0.79 | 0.638 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Hairy-related {1.2.4} (TFClass) |
| TF subfamily | HAIRY {1.2.4.1} (TFClass) |
| TFClass ID | TFClass: 1.2.4.1.2 |
| HGNC | HGNC:16005 |
| MGI | MGI:1098624 |
| EntrezGene (human) | GeneID:54626 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15206 (SSTAR profile) |
| UniProt ID (human) | HES2_HUMAN |
| UniProt ID (mouse) | HES2_MOUSE |
| UniProt AC (human) | Q9Y543 (TFClass) |
| UniProt AC (mouse) | O54792 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | HES2.H12INVIVO.0.S.D.pcm |
| PWM | HES2.H12INVIVO.0.S.D.pwm |
| PFM | HES2.H12INVIVO.0.S.D.pfm |
| Alignment | HES2.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | HES2.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | HES2.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | HES2.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | HES2.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2225.75 | 2748.75 | 2530.75 | 2395.75 |
| 02 | 2993.25 | 1323.25 | 3039.25 | 2545.25 |
| 03 | 2184.0 | 1603.0 | 1158.0 | 4956.0 |
| 04 | 295.0 | 90.0 | 9394.0 | 122.0 |
| 05 | 525.0 | 188.0 | 9090.0 | 98.0 |
| 06 | 7.0 | 9893.0 | 1.0 | 0.0 |
| 07 | 9895.0 | 1.0 | 5.0 | 0.0 |
| 08 | 0.0 | 9901.0 | 0.0 | 0.0 |
| 09 | 0.0 | 1.0 | 9900.0 | 0.0 |
| 10 | 30.0 | 669.0 | 1.0 | 9201.0 |
| 11 | 24.0 | 15.0 | 9806.0 | 56.0 |
| 12 | 616.0 | 4925.0 | 1006.0 | 3354.0 |
| 13 | 1185.25 | 5188.25 | 1782.25 | 1745.25 |
| 14 | 2509.25 | 2329.25 | 2832.25 | 2230.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.225 | 0.278 | 0.256 | 0.242 |
| 02 | 0.302 | 0.134 | 0.307 | 0.257 |
| 03 | 0.221 | 0.162 | 0.117 | 0.501 |
| 04 | 0.03 | 0.009 | 0.949 | 0.012 |
| 05 | 0.053 | 0.019 | 0.918 | 0.01 |
| 06 | 0.001 | 0.999 | 0.0 | 0.0 |
| 07 | 0.999 | 0.0 | 0.001 | 0.0 |
| 08 | 0.0 | 1.0 | 0.0 | 0.0 |
| 09 | 0.0 | 0.0 | 1.0 | 0.0 |
| 10 | 0.003 | 0.068 | 0.0 | 0.929 |
| 11 | 0.002 | 0.002 | 0.99 | 0.006 |
| 12 | 0.062 | 0.497 | 0.102 | 0.339 |
| 13 | 0.12 | 0.524 | 0.18 | 0.176 |
| 14 | 0.253 | 0.235 | 0.286 | 0.225 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.106 | 0.105 | 0.022 | -0.033 |
| 02 | 0.19 | -0.625 | 0.205 | 0.028 |
| 03 | -0.125 | -0.434 | -0.759 | 0.694 |
| 04 | -2.12 | -3.29 | 1.333 | -2.992 |
| 05 | -1.547 | -2.566 | 1.3 | -3.207 |
| 06 | -5.585 | 1.385 | -6.621 | -6.982 |
| 07 | 1.385 | -6.621 | -5.827 | -6.982 |
| 08 | -6.982 | 1.386 | -6.982 | -6.982 |
| 09 | -6.982 | -6.621 | 1.385 | -6.982 |
| 10 | -4.34 | -1.306 | -6.621 | 1.312 |
| 11 | -4.545 | -4.964 | 1.376 | -3.749 |
| 12 | -1.388 | 0.688 | -0.899 | 0.304 |
| 13 | -0.735 | 0.74 | -0.328 | -0.349 |
| 14 | 0.014 | -0.061 | 0.135 | -0.104 |
| P-value | Threshold |
|---|---|
| 0.001 | 0.36856 |
| 0.0005 | 2.15686 |
| 0.0001 | 5.81467 |