MotifHES1.H12INVIVO.1.S.D
Gene (human)HES1
(GeneCards)
Gene synonyms (human)BHLHB39, HL, HRY
Gene (mouse)Hes1
Gene synonyms (mouse)Hes-1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length13
ConsensusnhGSCACGTGbbn
GC content67.53%
Information content (bits; total / per base)14.619 / 1.125
Data sourcesHT-SELEX
Aligned words7858

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.996 0.994 0.994 0.99 0.988 0.982
best 0.996 0.994 0.994 0.99 0.988 0.982
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyHairy-related {1.2.4} (TFClass)
TF subfamilyHAIRY {1.2.4.1} (TFClass)
TFClass IDTFClass: 1.2.4.1.1
HGNCHGNC:5192
MGIMGI:104853
EntrezGene (human)GeneID:3280
(SSTAR profile)
EntrezGene (mouse)GeneID:15205
(SSTAR profile)
UniProt ID (human)HES1_HUMAN
UniProt ID (mouse)HES1_MOUSE
UniProt AC (human)Q14469
(TFClass)
UniProt AC (mouse)P35428
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
012088.51666.52309.51793.5
022082.0953.0906.03917.0
0320.034.07788.016.0
04172.02383.05303.00.0
050.07858.00.00.0
067858.00.00.00.0
070.07858.00.00.0
080.00.07858.00.0
091.03415.00.04442.0
100.02.07830.026.0
11786.02802.0807.03463.0
121106.03721.01902.01129.0
132113.01968.01625.02152.0
PFM
ACGT
010.2660.2120.2940.228
020.2650.1210.1150.498
030.0030.0040.9910.002
040.0220.3030.6750.0
050.01.00.00.0
061.00.00.00.0
070.01.00.00.0
080.00.01.00.0
090.00.4350.00.565
100.00.00.9960.003
110.10.3570.1030.441
120.1410.4740.2420.144
130.2690.250.2070.274
PWM
ACGT
010.061-0.1640.162-0.091
020.058-0.722-0.7730.69
03-4.482-3.9941.376-4.68
04-2.4240.1930.992-6.777
05-6.7771.385-6.777-6.777
061.385-6.777-6.777-6.777
07-6.7771.385-6.777-6.777
08-6.777-6.7771.385-6.777
09-6.4080.552-6.7770.815
10-6.777-6.1391.382-4.243
11-0.9140.355-0.8880.566
12-0.5740.638-0.032-0.553
130.0730.002-0.1890.091
Standard thresholds
P-value Threshold
0.001 0.531415
0.0005 2.005165
0.0001 5.13728