| Motif | HES1.H12INVIVO.1.S.D |
| Gene (human) | HES1 (GeneCards) |
| Gene synonyms (human) | BHLHB39, HL, HRY |
| Gene (mouse) | Hes1 |
| Gene synonyms (mouse) | Hes-1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | HES1.H12INVIVO.1.S.D |
| Gene (human) | HES1 (GeneCards) |
| Gene synonyms (human) | BHLHB39, HL, HRY |
| Gene (mouse) | Hes1 |
| Gene synonyms (mouse) | Hes-1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 13 |
| Consensus | nhGSCACGTGbbn |
| GC content | 67.53% |
| Information content (bits; total / per base) | 14.619 / 1.125 |
| Data sources | HT-SELEX |
| Aligned words | 7858 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.996 | 0.994 | 0.994 | 0.99 | 0.988 | 0.982 |
| best | 0.996 | 0.994 | 0.994 | 0.99 | 0.988 | 0.982 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Hairy-related {1.2.4} (TFClass) |
| TF subfamily | HAIRY {1.2.4.1} (TFClass) |
| TFClass ID | TFClass: 1.2.4.1.1 |
| HGNC | HGNC:5192 |
| MGI | MGI:104853 |
| EntrezGene (human) | GeneID:3280 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15205 (SSTAR profile) |
| UniProt ID (human) | HES1_HUMAN |
| UniProt ID (mouse) | HES1_MOUSE |
| UniProt AC (human) | Q14469 (TFClass) |
| UniProt AC (mouse) | P35428 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | HES1.H12INVIVO.1.S.D.pcm |
| PWM | HES1.H12INVIVO.1.S.D.pwm |
| PFM | HES1.H12INVIVO.1.S.D.pfm |
| Alignment | HES1.H12INVIVO.1.S.D.words.tsv |
| Threshold to P-value map | HES1.H12INVIVO.1.S.D.thr |
| Motif in other formats | |
| JASPAR format | HES1.H12INVIVO.1.S.D_jaspar_format.txt |
| MEME format | HES1.H12INVIVO.1.S.D_meme_format.meme |
| Transfac format | HES1.H12INVIVO.1.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2088.5 | 1666.5 | 2309.5 | 1793.5 |
| 02 | 2082.0 | 953.0 | 906.0 | 3917.0 |
| 03 | 20.0 | 34.0 | 7788.0 | 16.0 |
| 04 | 172.0 | 2383.0 | 5303.0 | 0.0 |
| 05 | 0.0 | 7858.0 | 0.0 | 0.0 |
| 06 | 7858.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 7858.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 7858.0 | 0.0 |
| 09 | 1.0 | 3415.0 | 0.0 | 4442.0 |
| 10 | 0.0 | 2.0 | 7830.0 | 26.0 |
| 11 | 786.0 | 2802.0 | 807.0 | 3463.0 |
| 12 | 1106.0 | 3721.0 | 1902.0 | 1129.0 |
| 13 | 2113.0 | 1968.0 | 1625.0 | 2152.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.266 | 0.212 | 0.294 | 0.228 |
| 02 | 0.265 | 0.121 | 0.115 | 0.498 |
| 03 | 0.003 | 0.004 | 0.991 | 0.002 |
| 04 | 0.022 | 0.303 | 0.675 | 0.0 |
| 05 | 0.0 | 1.0 | 0.0 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 1.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 1.0 | 0.0 |
| 09 | 0.0 | 0.435 | 0.0 | 0.565 |
| 10 | 0.0 | 0.0 | 0.996 | 0.003 |
| 11 | 0.1 | 0.357 | 0.103 | 0.441 |
| 12 | 0.141 | 0.474 | 0.242 | 0.144 |
| 13 | 0.269 | 0.25 | 0.207 | 0.274 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.061 | -0.164 | 0.162 | -0.091 |
| 02 | 0.058 | -0.722 | -0.773 | 0.69 |
| 03 | -4.482 | -3.994 | 1.376 | -4.68 |
| 04 | -2.424 | 0.193 | 0.992 | -6.777 |
| 05 | -6.777 | 1.385 | -6.777 | -6.777 |
| 06 | 1.385 | -6.777 | -6.777 | -6.777 |
| 07 | -6.777 | 1.385 | -6.777 | -6.777 |
| 08 | -6.777 | -6.777 | 1.385 | -6.777 |
| 09 | -6.408 | 0.552 | -6.777 | 0.815 |
| 10 | -6.777 | -6.139 | 1.382 | -4.243 |
| 11 | -0.914 | 0.355 | -0.888 | 0.566 |
| 12 | -0.574 | 0.638 | -0.032 | -0.553 |
| 13 | 0.073 | 0.002 | -0.189 | 0.091 |
| P-value | Threshold |
|---|---|
| 0.001 | 0.531415 |
| 0.0005 | 2.005165 |
| 0.0001 | 5.13728 |