MotifHES1.H12INVIVO.0.S.D
Gene (human)HES1
(GeneCards)
Gene synonyms (human)BHLHB39, HL, HRY
Gene (mouse)Hes1
Gene synonyms (mouse)Hes-1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length23
ConsensusnndGSCACGTGbSdbvCRCGbGn
GC content66.76%
Information content (bits; total / per base)20.159 / 0.876
Data sourcesHT-SELEX
Aligned words1296

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.999 0.999 0.997 0.996 0.985 0.981
best 0.999 0.999 0.997 0.996 0.985 0.981
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyHairy-related {1.2.4} (TFClass)
TF subfamilyHAIRY {1.2.4.1} (TFClass)
TFClass IDTFClass: 1.2.4.1.1
HGNCHGNC:5192
MGIMGI:104853
EntrezGene (human)GeneID:3280
(SSTAR profile)
EntrezGene (mouse)GeneID:15205
(SSTAR profile)
UniProt ID (human)HES1_HUMAN
UniProt ID (mouse)HES1_MOUSE
UniProt AC (human)Q14469
(TFClass)
UniProt AC (mouse)P35428
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
01319.0345.0318.0314.0
02456.5181.5346.5311.5
03406.073.0226.0591.0
0461.033.01148.054.0
05168.0254.0846.028.0
060.01296.00.00.0
071221.00.074.01.0
080.01295.01.00.0
090.00.01296.00.0
100.0263.00.01033.0
110.00.01287.09.0
1248.0592.0311.0345.0
13130.0796.0228.0142.0
14561.0128.0161.0446.0
15150.0257.0708.0181.0
16219.0232.0738.0107.0
1773.01076.0113.034.0
18782.0115.0358.041.0
19126.01052.064.054.0
2068.0116.01087.025.0
2160.0496.0139.0601.0
2239.7593.751047.75114.75
23184.0350.0357.0405.0
PFM
ACGT
010.2460.2660.2450.242
020.3520.140.2670.24
030.3130.0560.1740.456
040.0470.0250.8860.042
050.130.1960.6530.022
060.01.00.00.0
070.9420.00.0570.001
080.00.9990.0010.0
090.00.01.00.0
100.00.2030.00.797
110.00.00.9930.007
120.0370.4570.240.266
130.10.6140.1760.11
140.4330.0990.1240.344
150.1160.1980.5460.14
160.1690.1790.5690.083
170.0560.830.0870.026
180.6030.0890.2760.032
190.0970.8120.0490.042
200.0520.090.8390.019
210.0460.3830.1070.464
220.0310.0720.8080.089
230.1420.270.2750.313
PWM
ACGT
01-0.0150.062-0.019-0.031
020.341-0.5750.067-0.039
030.224-1.472-0.3580.599
04-1.646-2.2371.261-1.765
05-0.652-0.2420.956-2.392
06-5.2031.382-5.203-5.203
071.323-5.203-1.458-4.76
08-5.2031.381-4.76-5.203
09-5.203-5.2031.382-5.203
10-5.203-0.207-5.2031.156
11-5.203-5.2031.375-3.407
12-1.8780.6-0.0410.062
13-0.9050.896-0.349-0.818
140.547-0.92-0.6940.318
15-0.764-0.230.779-0.578
16-0.389-0.3320.82-1.097
17-1.4721.196-1.043-2.209
180.878-1.0260.099-2.03
19-0.9361.174-1.6-1.765
20-1.541-1.0171.207-2.498
21-1.6620.424-0.8390.615
22-2.06-1.2271.17-1.028
23-0.5620.0770.0960.222
Standard thresholds
P-value Threshold
0.001 -0.43029
0.0005 1.16556
0.0001 4.50121