| Motif | HEN1.H12INVIVO.0.S.D |
| Gene (human) | NHLH1 (GeneCards) |
| Gene synonyms (human) | BHLHA35, HEN1 |
| Gene (mouse) | Nhlh1 |
| Gene synonyms (mouse) | Hen1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HEN1.H12INVIVO.0.S.D |
| Gene (human) | NHLH1 (GeneCards) |
| Gene synonyms (human) | BHLHA35, HEN1 |
| Gene (mouse) | Nhlh1 |
| Gene synonyms (mouse) | Hen1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 14 |
| Consensus | vvCAGCTGMKnMhn |
| GC content | 62.98% |
| Information content (bits; total / per base) | 12.526 / 0.895 |
| Data sources | HT-SELEX |
| Aligned words | 6490 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 6 experiments | median | 0.899 | 0.893 | 0.722 | 0.738 | 0.615 | 0.643 |
| best | 0.939 | 0.935 | 0.751 | 0.765 | 0.642 | 0.66 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Tal-related {1.2.3} (TFClass) |
| TF subfamily | TAL-HEN {1.2.3.1} (TFClass) |
| TFClass ID | TFClass: 1.2.3.1.4 |
| HGNC | HGNC:7817 |
| MGI | MGI:98481 |
| EntrezGene (human) | GeneID:4807 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18071 (SSTAR profile) |
| UniProt ID (human) | HEN1_HUMAN |
| UniProt ID (mouse) | HEN1_MOUSE |
| UniProt AC (human) | Q02575 (TFClass) |
| UniProt AC (mouse) | Q02576 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 6 |
| Methyl-HT-SELEX | 0 |
| PCM | HEN1.H12INVIVO.0.S.D.pcm |
| PWM | HEN1.H12INVIVO.0.S.D.pwm |
| PFM | HEN1.H12INVIVO.0.S.D.pfm |
| Alignment | HEN1.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | HEN1.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | HEN1.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | HEN1.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | HEN1.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1759.75 | 2765.75 | 1186.75 | 777.75 |
| 02 | 996.25 | 1239.25 | 3337.25 | 917.25 |
| 03 | 162.0 | 6004.0 | 104.0 | 220.0 |
| 04 | 6304.0 | 54.0 | 32.0 | 100.0 |
| 05 | 14.0 | 589.0 | 5379.0 | 508.0 |
| 06 | 96.0 | 6209.0 | 184.0 | 1.0 |
| 07 | 1.0 | 0.0 | 0.0 | 6489.0 |
| 08 | 31.0 | 24.0 | 6335.0 | 100.0 |
| 09 | 880.0 | 4667.0 | 325.0 | 618.0 |
| 10 | 255.0 | 359.0 | 3437.0 | 2439.0 |
| 11 | 1287.0 | 2122.0 | 961.0 | 2120.0 |
| 12 | 1041.0 | 4101.0 | 319.0 | 1029.0 |
| 13 | 1263.5 | 3329.5 | 630.5 | 1266.5 |
| 14 | 1505.5 | 2366.5 | 1163.5 | 1454.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.271 | 0.426 | 0.183 | 0.12 |
| 02 | 0.154 | 0.191 | 0.514 | 0.141 |
| 03 | 0.025 | 0.925 | 0.016 | 0.034 |
| 04 | 0.971 | 0.008 | 0.005 | 0.015 |
| 05 | 0.002 | 0.091 | 0.829 | 0.078 |
| 06 | 0.015 | 0.957 | 0.028 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.005 | 0.004 | 0.976 | 0.015 |
| 09 | 0.136 | 0.719 | 0.05 | 0.095 |
| 10 | 0.039 | 0.055 | 0.53 | 0.376 |
| 11 | 0.198 | 0.327 | 0.148 | 0.327 |
| 12 | 0.16 | 0.632 | 0.049 | 0.159 |
| 13 | 0.195 | 0.513 | 0.097 | 0.195 |
| 14 | 0.232 | 0.365 | 0.179 | 0.224 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.081 | 0.533 | -0.312 | -0.734 |
| 02 | -0.487 | -0.269 | 0.72 | -0.569 |
| 03 | -2.292 | 1.307 | -2.728 | -1.99 |
| 04 | 1.356 | -3.364 | -3.861 | -2.766 |
| 05 | -4.608 | -1.011 | 1.198 | -1.158 |
| 06 | -2.806 | 1.341 | -2.166 | -6.232 |
| 07 | -6.232 | -6.607 | -6.607 | 1.385 |
| 08 | -3.891 | -4.128 | 1.361 | -2.766 |
| 09 | -0.611 | 1.056 | -1.603 | -0.963 |
| 10 | -1.843 | -1.504 | 0.75 | 0.407 |
| 11 | -0.231 | 0.268 | -0.523 | 0.267 |
| 12 | -0.443 | 0.926 | -1.621 | -0.455 |
| 13 | -0.25 | 0.718 | -0.943 | -0.247 |
| 14 | -0.075 | 0.377 | -0.332 | -0.109 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.80636 |
| 0.0005 | 4.92576 |
| 0.0001 | 7.18901 |