| Motif | HAND1.H12INVIVO.1.P.B |
| Gene (human) | HAND1 (GeneCards) |
| Gene synonyms (human) | BHLHA27, EHAND |
| Gene (mouse) | Hand1 |
| Gene synonyms (mouse) | Ehand, Hxt, Thing1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | B |
| Motif | HAND1.H12INVIVO.1.P.B |
| Gene (human) | HAND1 (GeneCards) |
| Gene synonyms (human) | BHLHA27, EHAND |
| Gene (mouse) | Hand1 |
| Gene synonyms (mouse) | Ehand, Hxt, Thing1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | B |
| Motif length | 11 |
| Consensus | dKSYCTGKhhd |
| GC content | 60.52% |
| Information content (bits; total / per base) | 9.89 / 0.899 |
| Data sources | ChIP-Seq |
| Aligned words | 1001 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (5) | 0.758 | 0.816 | 0.626 | 0.701 | 0.685 | 0.754 | 1.894 | 2.242 | 45.26 | 87.292 |
| Mouse | 1 (7) | 0.793 | 0.807 | 0.654 | 0.669 | 0.704 | 0.728 | 1.874 | 1.966 | 71.745 | 81.886 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Tal-related {1.2.3} (TFClass) |
| TF subfamily | TWIST {1.2.3.2} (TFClass) |
| TFClass ID | TFClass: 1.2.3.2.3 |
| HGNC | HGNC:4807 |
| MGI | MGI:103577 |
| EntrezGene (human) | GeneID:9421 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15110 (SSTAR profile) |
| UniProt ID (human) | HAND1_HUMAN |
| UniProt ID (mouse) | HAND1_MOUSE |
| UniProt AC (human) | O96004 (TFClass) |
| UniProt AC (mouse) | Q64279 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | HAND1.H12INVIVO.1.P.B.pcm |
| PWM | HAND1.H12INVIVO.1.P.B.pwm |
| PFM | HAND1.H12INVIVO.1.P.B.pfm |
| Alignment | HAND1.H12INVIVO.1.P.B.words.tsv |
| Threshold to P-value map | HAND1.H12INVIVO.1.P.B.thr |
| Motif in other formats | |
| JASPAR format | HAND1.H12INVIVO.1.P.B_jaspar_format.txt |
| MEME format | HAND1.H12INVIVO.1.P.B_meme_format.meme |
| Transfac format | HAND1.H12INVIVO.1.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 324.0 | 40.0 | 482.0 | 155.0 |
| 02 | 115.0 | 72.0 | 689.0 | 125.0 |
| 03 | 40.0 | 171.0 | 730.0 | 60.0 |
| 04 | 21.0 | 506.0 | 27.0 | 447.0 |
| 05 | 8.0 | 985.0 | 2.0 | 6.0 |
| 06 | 1.0 | 2.0 | 4.0 | 994.0 |
| 07 | 0.0 | 0.0 | 999.0 | 2.0 |
| 08 | 1.0 | 117.0 | 760.0 | 123.0 |
| 09 | 213.0 | 347.0 | 81.0 | 360.0 |
| 10 | 176.0 | 216.0 | 101.0 | 508.0 |
| 11 | 162.0 | 128.0 | 205.0 | 506.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.324 | 0.04 | 0.482 | 0.155 |
| 02 | 0.115 | 0.072 | 0.688 | 0.125 |
| 03 | 0.04 | 0.171 | 0.729 | 0.06 |
| 04 | 0.021 | 0.505 | 0.027 | 0.447 |
| 05 | 0.008 | 0.984 | 0.002 | 0.006 |
| 06 | 0.001 | 0.002 | 0.004 | 0.993 |
| 07 | 0.0 | 0.0 | 0.998 | 0.002 |
| 08 | 0.001 | 0.117 | 0.759 | 0.123 |
| 09 | 0.213 | 0.347 | 0.081 | 0.36 |
| 10 | 0.176 | 0.216 | 0.101 | 0.507 |
| 11 | 0.162 | 0.128 | 0.205 | 0.505 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.257 | -1.798 | 0.652 | -0.475 |
| 02 | -0.769 | -1.229 | 1.008 | -0.687 |
| 03 | -1.798 | -0.378 | 1.066 | -1.407 |
| 04 | -2.406 | 0.701 | -2.171 | 0.577 |
| 05 | -3.254 | 1.365 | -4.214 | -3.485 |
| 06 | -4.526 | -4.214 | -3.784 | 1.374 |
| 07 | -4.983 | -4.983 | 1.379 | -4.214 |
| 08 | -4.526 | -0.753 | 1.106 | -0.703 |
| 09 | -0.16 | 0.325 | -1.114 | 0.362 |
| 10 | -0.349 | -0.146 | -0.897 | 0.705 |
| 11 | -0.431 | -0.664 | -0.198 | 0.701 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.94342 |
| 0.0005 | 5.82319 |
| 0.0001 | 7.406005 |