MotifHAND1.H12INVITRO.1.P.D
Gene (human)HAND1
(GeneCards)
Gene synonyms (human)BHLHA27, EHAND
Gene (mouse)Hand1
Gene synonyms (mouse)Ehand, Hxt, Thing1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length11
ConsensusdKSYCTGKhhd
GC content60.52%
Information content (bits; total / per base)9.89 / 0.899
Data sourcesChIP-Seq
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.758 0.816 0.626 0.701 0.685 0.754 1.894 2.242 45.26 87.292
Mouse 1 (7) 0.793 0.807 0.654 0.669 0.704 0.728 1.874 1.966 71.745 81.886
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyTWIST {1.2.3.2} (TFClass)
TFClass IDTFClass: 1.2.3.2.3
HGNCHGNC:4807
MGIMGI:103577
EntrezGene (human)GeneID:9421
(SSTAR profile)
EntrezGene (mouse)GeneID:15110
(SSTAR profile)
UniProt ID (human)HAND1_HUMAN
UniProt ID (mouse)HAND1_MOUSE
UniProt AC (human)O96004
(TFClass)
UniProt AC (mouse)Q64279
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01324.040.0482.0155.0
02115.072.0689.0125.0
0340.0171.0730.060.0
0421.0506.027.0447.0
058.0985.02.06.0
061.02.04.0994.0
070.00.0999.02.0
081.0117.0760.0123.0
09213.0347.081.0360.0
10176.0216.0101.0508.0
11162.0128.0205.0506.0
PFM
ACGT
010.3240.040.4820.155
020.1150.0720.6880.125
030.040.1710.7290.06
040.0210.5050.0270.447
050.0080.9840.0020.006
060.0010.0020.0040.993
070.00.00.9980.002
080.0010.1170.7590.123
090.2130.3470.0810.36
100.1760.2160.1010.507
110.1620.1280.2050.505
PWM
ACGT
010.257-1.7980.652-0.475
02-0.769-1.2291.008-0.687
03-1.798-0.3781.066-1.407
04-2.4060.701-2.1710.577
05-3.2541.365-4.214-3.485
06-4.526-4.214-3.7841.374
07-4.983-4.9831.379-4.214
08-4.526-0.7531.106-0.703
09-0.160.325-1.1140.362
10-0.349-0.146-0.8970.705
11-0.431-0.664-0.1980.701
Standard thresholds
P-value Threshold
0.001 4.94342
0.0005 5.82319
0.0001 7.406005