MotifHAND1.H12INVITRO.0.P.D
Gene (human)HAND1
(GeneCards)
Gene synonyms (human)BHLHA27, EHAND
Gene (mouse)Hand1
Gene synonyms (mouse)Ehand, Hxt, Thing1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length17
ConsensusdbvYCTGSnhhnbvTCW
GC content54.43%
Information content (bits; total / per base)10.89 / 0.641
Data sourcesChIP-Seq
Aligned words1005

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.788 0.874 0.719 0.808 0.763 0.861 2.893 3.547 60.06 147.824
Mouse 1 (7) 0.901 0.903 0.836 0.846 0.884 0.89 3.604 3.679 257.959 303.149
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyTWIST {1.2.3.2} (TFClass)
TFClass IDTFClass: 1.2.3.2.3
HGNCHGNC:4807
MGIMGI:103577
EntrezGene (human)GeneID:9421
(SSTAR profile)
EntrezGene (mouse)GeneID:15110
(SSTAR profile)
UniProt ID (human)HAND1_HUMAN
UniProt ID (mouse)HAND1_MOUSE
UniProt AC (human)O96004
(TFClass)
UniProt AC (mouse)Q64279
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01241.0123.0453.0188.0
02113.0205.0513.0174.0
03141.0198.0536.0130.0
0442.0406.078.0479.0
0510.0975.010.010.0
068.017.03.0977.0
075.010.0979.011.0
089.0221.0625.0150.0
09255.0225.0173.0352.0
10194.0232.0121.0458.0
11237.0185.0143.0440.0
12201.0264.0237.0303.0
1355.0379.099.0472.0
14202.0274.0396.0133.0
1515.050.084.0856.0
1636.0862.040.067.0
17588.0159.025.0233.0
PFM
ACGT
010.240.1220.4510.187
020.1120.2040.510.173
030.140.1970.5330.129
040.0420.4040.0780.477
050.010.970.010.01
060.0080.0170.0030.972
070.0050.010.9740.011
080.0090.220.6220.149
090.2540.2240.1720.35
100.1930.2310.120.456
110.2360.1840.1420.438
120.20.2630.2360.301
130.0550.3770.0990.47
140.2010.2730.3940.132
150.0150.050.0840.852
160.0360.8580.040.067
170.5850.1580.0250.232
PWM
ACGT
01-0.041-0.7070.586-0.288
02-0.791-0.2020.71-0.364
03-0.572-0.2360.754-0.653
04-1.7550.477-1.1550.642
05-3.0711.351-3.071-3.071
06-3.258-2.603-3.981.353
07-3.627-3.0711.355-2.989
08-3.16-0.1270.907-0.511
090.015-0.11-0.370.335
10-0.257-0.079-0.7230.597
11-0.058-0.304-0.5580.557
12-0.2210.049-0.0580.186
13-1.4950.409-0.9210.627
14-0.2170.0860.452-0.63
15-2.716-1.587-1.0821.221
16-1.9031.228-1.802-1.303
170.846-0.454-2.248-0.075
Standard thresholds
P-value Threshold
0.001 4.52146
0.0005 5.43506
0.0001 7.29981