MotifGSX1.H12INVIVO.0.SM.D
Gene (human)GSX1
(GeneCards)
Gene synonyms (human)GSH1
Gene (mouse)Gsx1
Gene synonyms (mouse)Gsh-1, Gsh1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length9
ConsensusnYTAATdvn
GC content27.12%
Information content (bits; total / per base)9.155 / 1.017
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words8383

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.82 0.769 0.764 0.725 0.705 0.68
best 0.944 0.906 0.926 0.883 0.875 0.834
Methyl HT-SELEX, 1 experiments median 0.903 0.844 0.887 0.827 0.837 0.784
best 0.903 0.844 0.887 0.827 0.837 0.784
Non-Methyl HT-SELEX, 3 experiments median 0.737 0.694 0.64 0.622 0.573 0.576
best 0.944 0.906 0.926 0.883 0.875 0.834

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.691 0.423 0.679 0.472
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyGSX {3.1.1.12} (TFClass)
TFClass IDTFClass: 3.1.1.12.1
HGNCHGNC:20374
MGIMGI:95842
EntrezGene (human)GeneID:219409
(SSTAR profile)
EntrezGene (mouse)GeneID:14842
(SSTAR profile)
UniProt ID (human)GSX1_HUMAN
UniProt ID (mouse)GSX1_MOUSE
UniProt AC (human)Q9H4S2
(TFClass)
UniProt AC (mouse)P31315
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012375.251945.252183.251879.25
02221.03084.01108.03970.0
030.00.00.08383.0
048378.05.00.00.0
058383.00.00.00.0
060.00.00.08383.0
071050.0434.02487.04412.0
083828.01148.02653.0754.0
091236.252930.252484.251732.25
PFM
ACGT
010.2830.2320.260.224
020.0260.3680.1320.474
030.00.00.01.0
040.9990.0010.00.0
051.00.00.00.0
060.00.00.01.0
070.1250.0520.2970.526
080.4570.1370.3160.09
090.1470.350.2960.207
PWM
ACGT
010.125-0.0740.041-0.109
02-2.240.386-0.6360.638
03-6.834-6.834-6.8341.385
041.385-5.667-6.834-6.834
051.385-6.834-6.834-6.834
06-6.834-6.834-6.8341.385
07-0.69-1.5710.1710.744
080.602-0.6010.236-1.02
09-0.5270.3350.17-0.19
Standard thresholds
P-value Threshold
0.001 5.66161
0.0005 6.333745
0.0001 7.30823