| Motif | GSX1.H12INVIVO.0.SM.D |
| Gene (human) | GSX1 (GeneCards) |
| Gene synonyms (human) | GSH1 |
| Gene (mouse) | Gsx1 |
| Gene synonyms (mouse) | Gsh-1, Gsh1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | GSX1.H12INVIVO.0.SM.D |
| Gene (human) | GSX1 (GeneCards) |
| Gene synonyms (human) | GSH1 |
| Gene (mouse) | Gsx1 |
| Gene synonyms (mouse) | Gsh-1, Gsh1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 9 |
| Consensus | nYTAATdvn |
| GC content | 27.12% |
| Information content (bits; total / per base) | 9.155 / 1.017 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 8383 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.82 | 0.769 | 0.764 | 0.725 | 0.705 | 0.68 |
| best | 0.944 | 0.906 | 0.926 | 0.883 | 0.875 | 0.834 | |
| Methyl HT-SELEX, 1 experiments | median | 0.903 | 0.844 | 0.887 | 0.827 | 0.837 | 0.784 |
| best | 0.903 | 0.844 | 0.887 | 0.827 | 0.837 | 0.784 | |
| Non-Methyl HT-SELEX, 3 experiments | median | 0.737 | 0.694 | 0.64 | 0.622 | 0.573 | 0.576 |
| best | 0.944 | 0.906 | 0.926 | 0.883 | 0.875 | 0.834 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.691 | 0.423 | 0.679 | 0.472 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | GSX {3.1.1.12} (TFClass) |
| TFClass ID | TFClass: 3.1.1.12.1 |
| HGNC | HGNC:20374 |
| MGI | MGI:95842 |
| EntrezGene (human) | GeneID:219409 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:14842 (SSTAR profile) |
| UniProt ID (human) | GSX1_HUMAN |
| UniProt ID (mouse) | GSX1_MOUSE |
| UniProt AC (human) | Q9H4S2 (TFClass) |
| UniProt AC (mouse) | P31315 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 3 |
| Methyl-HT-SELEX | 1 |
| PCM | GSX1.H12INVIVO.0.SM.D.pcm |
| PWM | GSX1.H12INVIVO.0.SM.D.pwm |
| PFM | GSX1.H12INVIVO.0.SM.D.pfm |
| Alignment | GSX1.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | GSX1.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | GSX1.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | GSX1.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | GSX1.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2375.25 | 1945.25 | 2183.25 | 1879.25 |
| 02 | 221.0 | 3084.0 | 1108.0 | 3970.0 |
| 03 | 0.0 | 0.0 | 0.0 | 8383.0 |
| 04 | 8378.0 | 5.0 | 0.0 | 0.0 |
| 05 | 8383.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 8383.0 |
| 07 | 1050.0 | 434.0 | 2487.0 | 4412.0 |
| 08 | 3828.0 | 1148.0 | 2653.0 | 754.0 |
| 09 | 1236.25 | 2930.25 | 2484.25 | 1732.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.283 | 0.232 | 0.26 | 0.224 |
| 02 | 0.026 | 0.368 | 0.132 | 0.474 |
| 03 | 0.0 | 0.0 | 0.0 | 1.0 |
| 04 | 0.999 | 0.001 | 0.0 | 0.0 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.125 | 0.052 | 0.297 | 0.526 |
| 08 | 0.457 | 0.137 | 0.316 | 0.09 |
| 09 | 0.147 | 0.35 | 0.296 | 0.207 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.125 | -0.074 | 0.041 | -0.109 |
| 02 | -2.24 | 0.386 | -0.636 | 0.638 |
| 03 | -6.834 | -6.834 | -6.834 | 1.385 |
| 04 | 1.385 | -5.667 | -6.834 | -6.834 |
| 05 | 1.385 | -6.834 | -6.834 | -6.834 |
| 06 | -6.834 | -6.834 | -6.834 | 1.385 |
| 07 | -0.69 | -1.571 | 0.171 | 0.744 |
| 08 | 0.602 | -0.601 | 0.236 | -1.02 |
| 09 | -0.527 | 0.335 | 0.17 | -0.19 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.66161 |
| 0.0005 | 6.333745 |
| 0.0001 | 7.30823 |