| Motif | GSC2.H12INVIVO.0.SM.D |
| Gene (human) | GSC2 (GeneCards) |
| Gene synonyms (human) | GSCL |
| Gene (mouse) | Gsc2 |
| Gene synonyms (mouse) | Gscl |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | GSC2.H12INVIVO.0.SM.D |
| Gene (human) | GSC2 (GeneCards) |
| Gene synonyms (human) | GSCL |
| Gene (mouse) | Gsc2 |
| Gene synonyms (mouse) | Gscl |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 9 |
| Consensus | nvRATTAdn |
| GC content | 35.87% |
| Information content (bits; total / per base) | 8.044 / 0.894 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 8964 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.773 | 0.727 | 0.683 | 0.658 | 0.591 | 0.597 |
| best | 0.916 | 0.87 | 0.896 | 0.845 | 0.816 | 0.78 | |
| Methyl HT-SELEX, 1 experiments | median | 0.861 | 0.812 | 0.754 | 0.722 | 0.631 | 0.639 |
| best | 0.861 | 0.812 | 0.754 | 0.722 | 0.631 | 0.639 | |
| Non-Methyl HT-SELEX, 3 experiments | median | 0.686 | 0.643 | 0.613 | 0.593 | 0.55 | 0.555 |
| best | 0.916 | 0.87 | 0.896 | 0.845 | 0.816 | 0.78 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | Paired-related HD {3.1.3} (TFClass) |
| TF subfamily | GSC {3.1.3.9} (TFClass) |
| TFClass ID | TFClass: 3.1.3.9.2 |
| HGNC | HGNC:4613 |
| MGI | MGI:892006 |
| EntrezGene (human) | GeneID:2928 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | GSC2_HUMAN |
| UniProt ID (mouse) | GSC2_MOUSE |
| UniProt AC (human) | O15499 (TFClass) |
| UniProt AC (mouse) | P56916 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 3 |
| Methyl-HT-SELEX | 1 |
| PCM | GSC2.H12INVIVO.0.SM.D.pcm |
| PWM | GSC2.H12INVIVO.0.SM.D.pwm |
| PFM | GSC2.H12INVIVO.0.SM.D.pfm |
| Alignment | GSC2.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | GSC2.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | GSC2.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | GSC2.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | GSC2.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2462.0 | 2473.0 | 2640.0 | 1389.0 |
| 02 | 1780.75 | 1801.75 | 4151.75 | 1229.75 |
| 03 | 1414.0 | 764.0 | 6553.0 | 233.0 |
| 04 | 8392.0 | 529.0 | 43.0 | 0.0 |
| 05 | 0.0 | 0.0 | 51.0 | 8913.0 |
| 06 | 0.0 | 95.0 | 149.0 | 8720.0 |
| 07 | 8286.0 | 106.0 | 234.0 | 338.0 |
| 08 | 2927.25 | 1099.25 | 3331.25 | 1606.25 |
| 09 | 1573.75 | 2280.75 | 2635.75 | 2473.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.275 | 0.276 | 0.295 | 0.155 |
| 02 | 0.199 | 0.201 | 0.463 | 0.137 |
| 03 | 0.158 | 0.085 | 0.731 | 0.026 |
| 04 | 0.936 | 0.059 | 0.005 | 0.0 |
| 05 | 0.0 | 0.0 | 0.006 | 0.994 |
| 06 | 0.0 | 0.011 | 0.017 | 0.973 |
| 07 | 0.924 | 0.012 | 0.026 | 0.038 |
| 08 | 0.327 | 0.123 | 0.372 | 0.179 |
| 09 | 0.176 | 0.254 | 0.294 | 0.276 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.094 | 0.098 | 0.164 | -0.478 |
| 02 | -0.23 | -0.218 | 0.616 | -0.599 |
| 03 | -0.46 | -1.074 | 1.072 | -2.255 |
| 04 | 1.32 | -1.44 | -3.903 | -6.894 |
| 05 | -6.894 | -6.894 | -3.74 | 1.38 |
| 06 | -6.894 | -3.138 | -2.697 | 1.358 |
| 07 | 1.307 | -3.031 | -2.251 | -1.886 |
| 08 | 0.267 | -0.711 | 0.396 | -0.333 |
| 09 | -0.353 | 0.018 | 0.162 | 0.099 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.399405 |
| 0.0005 | 6.17428 |
| 0.0001 | 7.02838 |