| Motif | GSC.H12RSNP.0.SM.B |
| Gene (human) | GSC (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Gsc |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | GSC.H12RSNP.0.SM.B |
| Gene (human) | GSC (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Gsc |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 9 |
| Consensus | nKGATTAdb |
| GC content | 39.74% |
| Information content (bits; total / per base) | 9.793 / 1.088 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9364 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.92 | 0.874 | 0.886 | 0.836 | 0.843 | 0.793 |
| best | 0.987 | 0.98 | 0.98 | 0.968 | 0.961 | 0.944 | |
| Methyl HT-SELEX, 2 experiments | median | 0.961 | 0.937 | 0.939 | 0.91 | 0.902 | 0.87 |
| best | 0.985 | 0.976 | 0.975 | 0.961 | 0.945 | 0.926 | |
| Non-Methyl HT-SELEX, 4 experiments | median | 0.841 | 0.798 | 0.767 | 0.732 | 0.704 | 0.682 |
| best | 0.987 | 0.98 | 0.98 | 0.968 | 0.961 | 0.944 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.748 | 0.605 | 0.765 | 0.563 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | Paired-related HD {3.1.3} (TFClass) |
| TF subfamily | GSC {3.1.3.9} (TFClass) |
| TFClass ID | TFClass: 3.1.3.9.1 |
| HGNC | HGNC:4612 |
| MGI | MGI:95841 |
| EntrezGene (human) | GeneID:145258 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:14836 (SSTAR profile) |
| UniProt ID (human) | GSC_HUMAN |
| UniProt ID (mouse) | GSC_MOUSE |
| UniProt AC (human) | P56915 (TFClass) |
| UniProt AC (mouse) | Q02591 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 2 |
| PCM | GSC.H12RSNP.0.SM.B.pcm |
| PWM | GSC.H12RSNP.0.SM.B.pwm |
| PFM | GSC.H12RSNP.0.SM.B.pfm |
| Alignment | GSC.H12RSNP.0.SM.B.words.tsv |
| Threshold to P-value map | GSC.H12RSNP.0.SM.B.thr |
| Motif in other formats | |
| JASPAR format | GSC.H12RSNP.0.SM.B_jaspar_format.txt |
| MEME format | GSC.H12RSNP.0.SM.B_meme_format.meme |
| Transfac format | GSC.H12RSNP.0.SM.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2072.0 | 2789.0 | 2842.0 | 1661.0 |
| 02 | 1076.0 | 762.0 | 5926.0 | 1600.0 |
| 03 | 208.0 | 199.0 | 8947.0 | 10.0 |
| 04 | 8984.0 | 380.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 9364.0 |
| 06 | 6.0 | 565.0 | 0.0 | 8793.0 |
| 07 | 9313.0 | 6.0 | 6.0 | 39.0 |
| 08 | 3023.5 | 1407.5 | 3501.5 | 1431.5 |
| 09 | 1212.75 | 3513.75 | 2648.75 | 1988.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.221 | 0.298 | 0.304 | 0.177 |
| 02 | 0.115 | 0.081 | 0.633 | 0.171 |
| 03 | 0.022 | 0.021 | 0.955 | 0.001 |
| 04 | 0.959 | 0.041 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 1.0 |
| 06 | 0.001 | 0.06 | 0.0 | 0.939 |
| 07 | 0.995 | 0.001 | 0.001 | 0.004 |
| 08 | 0.323 | 0.15 | 0.374 | 0.153 |
| 09 | 0.13 | 0.375 | 0.283 | 0.212 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.122 | 0.175 | 0.194 | -0.343 |
| 02 | -0.776 | -1.12 | 0.928 | -0.38 |
| 03 | -2.411 | -2.455 | 1.34 | -5.251 |
| 04 | 1.344 | -1.813 | -6.932 | -6.932 |
| 05 | -6.932 | -6.932 | -6.932 | 1.386 |
| 06 | -5.645 | -1.418 | -6.932 | 1.323 |
| 07 | 1.38 | -5.645 | -5.645 | -4.039 |
| 08 | 0.256 | -0.508 | 0.402 | -0.491 |
| 09 | -0.657 | 0.406 | 0.123 | -0.163 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.03364 |
| 0.0005 | 6.12997 |
| 0.0001 | 7.63352 |