| Motif | GRHL2.H12INVITRO.1.P.D |
| Gene (human) | GRHL2 (GeneCards) |
| Gene synonyms (human) | BOM, TFCP2L3 |
| Gene (mouse) | Grhl2 |
| Gene synonyms (mouse) | Bom, Tcfcp2l3 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | GRHL2.H12INVITRO.1.P.D |
| Gene (human) | GRHL2 (GeneCards) |
| Gene synonyms (human) | BOM, TFCP2L3 |
| Gene (mouse) | Grhl2 |
| Gene synonyms (mouse) | Bom, Tcfcp2l3 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 11 |
| Consensus | RRChKGTTYKn |
| GC content | 47.67% |
| Information content (bits; total / per base) | 10.571 / 0.961 |
| Data sources | ChIP-Seq |
| Aligned words | 999 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 23 (153) | 0.877 | 0.921 | 0.778 | 0.855 | 0.808 | 0.873 | 2.627 | 3.167 | 437.638 | 549.367 |
| Mouse | 4 (28) | 0.857 | 0.894 | 0.767 | 0.824 | 0.789 | 0.841 | 2.73 | 3.203 | 302.71 | 438.036 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 11.957 | 11.282 | 0.338 | 0.291 |
| TF superclass | Immunoglobulin fold {6} (TFClass) |
| TF class | Grainyhead domain factors {6.7} (TFClass) |
| TF family | Grainyhead-related {6.7.1} (TFClass) |
| TF subfamily | GRH-like {6.7.1.1} (TFClass) |
| TFClass ID | TFClass: 6.7.1.1.2 |
| HGNC | HGNC:2799 |
| MGI | MGI:2182543 |
| EntrezGene (human) | GeneID:79977 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:252973 (SSTAR profile) |
| UniProt ID (human) | GRHL2_HUMAN |
| UniProt ID (mouse) | GRHL2_MOUSE |
| UniProt AC (human) | Q6ISB3 (TFClass) |
| UniProt AC (mouse) | Q8K5C0 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 23 human, 4 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | GRHL2.H12INVITRO.1.P.D.pcm |
| PWM | GRHL2.H12INVITRO.1.P.D.pwm |
| PFM | GRHL2.H12INVITRO.1.P.D.pfm |
| Alignment | GRHL2.H12INVITRO.1.P.D.words.tsv |
| Threshold to P-value map | GRHL2.H12INVITRO.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | GRHL2.H12INVITRO.1.P.D_jaspar_format.txt |
| MEME format | GRHL2.H12INVITRO.1.P.D_meme_format.meme |
| Transfac format | GRHL2.H12INVITRO.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 657.0 | 18.0 | 221.0 | 103.0 |
| 02 | 644.0 | 8.0 | 225.0 | 122.0 |
| 03 | 3.0 | 990.0 | 4.0 | 2.0 |
| 04 | 267.0 | 432.0 | 24.0 | 276.0 |
| 05 | 126.0 | 4.0 | 716.0 | 153.0 |
| 06 | 1.0 | 1.0 | 995.0 | 2.0 |
| 07 | 6.0 | 34.0 | 0.0 | 959.0 |
| 08 | 8.0 | 151.0 | 10.0 | 830.0 |
| 09 | 46.0 | 296.0 | 28.0 | 629.0 |
| 10 | 28.0 | 128.0 | 425.0 | 418.0 |
| 11 | 205.0 | 158.0 | 370.0 | 266.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.658 | 0.018 | 0.221 | 0.103 |
| 02 | 0.645 | 0.008 | 0.225 | 0.122 |
| 03 | 0.003 | 0.991 | 0.004 | 0.002 |
| 04 | 0.267 | 0.432 | 0.024 | 0.276 |
| 05 | 0.126 | 0.004 | 0.717 | 0.153 |
| 06 | 0.001 | 0.001 | 0.996 | 0.002 |
| 07 | 0.006 | 0.034 | 0.0 | 0.96 |
| 08 | 0.008 | 0.151 | 0.01 | 0.831 |
| 09 | 0.046 | 0.296 | 0.028 | 0.63 |
| 10 | 0.028 | 0.128 | 0.425 | 0.418 |
| 11 | 0.205 | 0.158 | 0.37 | 0.266 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.963 | -2.545 | -0.121 | -0.876 |
| 02 | 0.943 | -3.252 | -0.104 | -0.709 |
| 03 | -3.974 | 1.372 | -3.782 | -4.212 |
| 04 | 0.066 | 0.545 | -2.28 | 0.099 |
| 05 | -0.677 | -3.782 | 1.049 | -0.486 |
| 06 | -4.524 | -4.524 | 1.377 | -4.212 |
| 07 | -3.483 | -1.951 | -4.981 | 1.34 |
| 08 | -3.252 | -0.499 | -3.065 | 1.196 |
| 09 | -1.662 | 0.169 | -2.135 | 0.92 |
| 10 | -2.135 | -0.662 | 0.529 | 0.512 |
| 11 | -0.196 | -0.454 | 0.391 | 0.063 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.638765 |
| 0.0005 | 5.654495 |
| 0.0001 | 7.506565 |