MotifGRHL2.H12INVITRO.1.P.D
Gene (human)GRHL2
(GeneCards)
Gene synonyms (human)BOM, TFCP2L3
Gene (mouse)Grhl2
Gene synonyms (mouse)Bom, Tcfcp2l3
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length11
ConsensusRRChKGTTYKn
GC content47.67%
Information content (bits; total / per base)10.571 / 0.961
Data sourcesChIP-Seq
Aligned words999

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 23 (153) 0.877 0.921 0.778 0.855 0.808 0.873 2.627 3.167 437.638 549.367
Mouse 4 (28) 0.857 0.894 0.767 0.824 0.789 0.841 2.73 3.203 302.71 438.036

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 11.957 11.282 0.338 0.291
TF superclassImmunoglobulin fold {6} (TFClass)
TF classGrainyhead domain factors {6.7} (TFClass)
TF familyGrainyhead-related {6.7.1} (TFClass)
TF subfamilyGRH-like {6.7.1.1} (TFClass)
TFClass IDTFClass: 6.7.1.1.2
HGNCHGNC:2799
MGIMGI:2182543
EntrezGene (human)GeneID:79977
(SSTAR profile)
EntrezGene (mouse)GeneID:252973
(SSTAR profile)
UniProt ID (human)GRHL2_HUMAN
UniProt ID (mouse)GRHL2_MOUSE
UniProt AC (human)Q6ISB3
(TFClass)
UniProt AC (mouse)Q8K5C0
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 23 human, 4 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01657.018.0221.0103.0
02644.08.0225.0122.0
033.0990.04.02.0
04267.0432.024.0276.0
05126.04.0716.0153.0
061.01.0995.02.0
076.034.00.0959.0
088.0151.010.0830.0
0946.0296.028.0629.0
1028.0128.0425.0418.0
11205.0158.0370.0266.0
PFM
ACGT
010.6580.0180.2210.103
020.6450.0080.2250.122
030.0030.9910.0040.002
040.2670.4320.0240.276
050.1260.0040.7170.153
060.0010.0010.9960.002
070.0060.0340.00.96
080.0080.1510.010.831
090.0460.2960.0280.63
100.0280.1280.4250.418
110.2050.1580.370.266
PWM
ACGT
010.963-2.545-0.121-0.876
020.943-3.252-0.104-0.709
03-3.9741.372-3.782-4.212
040.0660.545-2.280.099
05-0.677-3.7821.049-0.486
06-4.524-4.5241.377-4.212
07-3.483-1.951-4.9811.34
08-3.252-0.499-3.0651.196
09-1.6620.169-2.1350.92
10-2.135-0.6620.5290.512
11-0.196-0.4540.3910.063
Standard thresholds
P-value Threshold
0.001 4.638765
0.0005 5.654495
0.0001 7.506565