MotifGRHL2.H12INVITRO.0.P.D
Gene (human)GRHL2
(GeneCards)
Gene synonyms (human)BOM, TFCP2L3
Gene (mouse)Grhl2
Gene synonyms (mouse)Bom, Tcfcp2l3
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusCYKGTTbddChRG
GC content58.02%
Information content (bits; total / per base)11.91 / 0.916
Data sourcesChIP-Seq
Aligned words950

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 23 (153) 0.937 0.967 0.882 0.942 0.89 0.93 3.163 3.695 594.569 672.495
Mouse 4 (28) 0.889 0.933 0.839 0.87 0.831 0.88 2.935 3.156 353.602 650.357

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 10.618 9.993 0.405 0.281
TF superclassImmunoglobulin fold {6} (TFClass)
TF classGrainyhead domain factors {6.7} (TFClass)
TF familyGrainyhead-related {6.7.1} (TFClass)
TF subfamilyGRH-like {6.7.1.1} (TFClass)
TFClass IDTFClass: 6.7.1.1.2
HGNCHGNC:2799
MGIMGI:2182543
EntrezGene (human)GeneID:79977
(SSTAR profile)
EntrezGene (mouse)GeneID:252973
(SSTAR profile)
UniProt ID (human)GRHL2_HUMAN
UniProt ID (mouse)GRHL2_MOUSE
UniProt AC (human)Q6ISB3
(TFClass)
UniProt AC (mouse)Q8K5C0
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 23 human, 4 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
011.0944.03.02.0
02187.0503.014.0246.0
03189.012.0497.0252.0
041.02.0916.031.0
058.057.01.0884.0
067.0226.05.0712.0
0783.0205.0111.0551.0
08105.059.0458.0328.0
09248.062.0398.0242.0
104.0896.026.024.0
11307.0408.049.0186.0
12419.05.0371.0155.0
136.0144.0793.07.0
PFM
ACGT
010.0010.9940.0030.002
020.1970.5290.0150.259
030.1990.0130.5230.265
040.0010.0020.9640.033
050.0080.060.0010.931
060.0070.2380.0050.749
070.0870.2160.1170.58
080.1110.0620.4820.345
090.2610.0650.4190.255
100.0040.9430.0270.025
110.3230.4290.0520.196
120.4410.0050.3910.163
130.0060.1520.8350.007
PWM
ACGT
01-4.4791.375-3.927-4.165
02-0.2370.747-2.7230.035
03-0.227-2.8590.7350.059
04-4.479-4.1651.345-1.99
05-3.204-1.405-4.4791.309
06-3.312-0.049-3.5731.093
07-1.038-0.146-0.7530.837
08-0.807-1.3710.6530.321
090.043-1.3230.5130.019
10-3.7341.322-2.155-2.23
110.2550.538-1.551-0.242
120.565-3.5730.443-0.423
13-3.434-0.4961.201-3.312
Standard thresholds
P-value Threshold
0.001 4.10506
0.0005 5.15516
0.0001 7.35508