MotifGRHL1.H12RSNP.0.PSM.A
Gene (human)GRHL1
(GeneCards)
Gene synonyms (human)LBP32, MGR, TFCP2L2
Gene (mouse)Grhl1
Gene synonyms (mouse)Mgr, Tcfcp2l2
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length20
ConsensusndRAACCGGTTWWWCYRGTY
GC content44.51%
Information content (bits; total / per base)24.623 / 1.231
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words391

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (20) 0.547 0.551 0.444 0.452 0.904 0.924 3.998 4.358 350.217 538.77

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 8 experiments median 0.999 0.999 0.994 0.993 0.937 0.939
best 1.0 1.0 0.999 0.999 0.995 0.993
Methyl HT-SELEX, 2 experiments median 0.999 0.999 0.997 0.996 0.988 0.984
best 0.999 0.999 0.997 0.996 0.99 0.986
Non-Methyl HT-SELEX, 6 experiments median 0.988 0.985 0.924 0.921 0.795 0.81
best 1.0 1.0 0.999 0.999 0.995 0.993

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.926 0.73 0.894 0.587
TF superclassImmunoglobulin fold {6} (TFClass)
TF classGrainyhead domain factors {6.7} (TFClass)
TF familyGrainyhead-related {6.7.1} (TFClass)
TF subfamilyGRH-like {6.7.1.1} (TFClass)
TFClass IDTFClass: 6.7.1.1.1
HGNCHGNC:17923
MGIMGI:2182540
EntrezGene (human)GeneID:29841
(SSTAR profile)
EntrezGene (mouse)GeneID:195733
(SSTAR profile)
UniProt ID (human)GRHL1_HUMAN
UniProt ID (mouse)GRHL1_MOUSE
UniProt AC (human)Q9NZI5
(TFClass)
UniProt AC (mouse)Q921D9
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 0 mouse
HT-SELEX 6
Methyl-HT-SELEX 2
PCM
ACGT
01137.2569.25109.2575.25
02168.553.585.583.5
03276.010.062.043.0
04386.00.04.01.0
05391.00.00.00.0
060.0391.00.00.0
070.0391.00.00.0
080.00.0391.00.0
090.00.0391.00.0
101.00.00.0390.0
115.019.00.0367.0
12100.038.09.0244.0
13207.08.066.0110.0
14233.00.046.0112.0
152.0384.04.01.0
1672.0210.03.0106.0
17121.00.0248.022.0
187.031.0350.03.0
1938.7520.753.75327.75
2031.7562.7519.75276.75
PFM
ACGT
010.3510.1770.2790.192
020.4310.1370.2190.214
030.7060.0260.1590.11
040.9870.00.010.003
051.00.00.00.0
060.01.00.00.0
070.01.00.00.0
080.00.01.00.0
090.00.01.00.0
100.0030.00.00.997
110.0130.0490.00.939
120.2560.0970.0230.624
130.5290.020.1690.281
140.5960.00.1180.286
150.0050.9820.010.003
160.1840.5370.0080.271
170.3090.00.6340.056
180.0180.0790.8950.008
190.0990.0530.010.838
200.0810.160.0510.708
PWM
ACGT
010.335-0.3390.11-0.257
020.538-0.59-0.132-0.155
031.028-2.156-0.447-0.802
041.362-4.197-2.894-3.684
051.375-4.197-4.197-4.197
06-4.1971.375-4.197-4.197
07-4.1971.375-4.197-4.197
08-4.197-4.1971.375-4.197
09-4.197-4.1971.375-4.197
10-3.684-4.197-4.1971.372
11-2.727-1.578-4.1971.312
120.022-0.921-2.2470.906
130.742-2.347-0.3860.116
140.86-4.197-0.7370.134
15-3.3471.357-2.894-3.684
16-0.30.757-3.0950.08
170.21-4.1970.922-1.441
18-2.458-1.1171.265-3.095
19-0.903-1.496-2.9411.199
20-1.094-0.435-1.5421.031
Standard thresholds
P-value Threshold
0.001 -3.43609
0.0005 -1.69044
0.0001 2.02671