MotifGMEB2.H12INVIVO.1.P.C
Gene (human)GMEB2
(GeneCards)
Gene synonyms (human)KIAA1269
Gene (mouse)Gmeb2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length9
ConsensusbKGCGTSMS
GC content65.37%
Information content (bits; total / per base)9.165 / 1.018
Data sourcesChIP-Seq
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.848 0.853 0.73 0.745 0.712 0.731 1.789 1.87 146.18 158.854

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 5 experiments median 0.862 0.789 0.825 0.759 0.72 0.691
best 0.949 0.913 0.944 0.903 0.936 0.893
Methyl HT-SELEX, 1 experiments median 0.949 0.913 0.942 0.902 0.931 0.888
best 0.949 0.913 0.942 0.902 0.931 0.888
Non-Methyl HT-SELEX, 4 experiments median 0.784 0.714 0.731 0.68 0.649 0.629
best 0.947 0.91 0.944 0.903 0.936 0.893
TF superclassalpha-Helices exposed by beta-structures {5} (TFClass)
TF classSAND domain factors {5.3} (TFClass)
TF familyGMEB {5.3.3} (TFClass)
TF subfamilyGMEB {5.3.3.1} (TFClass)
TFClass IDTFClass: 5.3.3.1.2
HGNCHGNC:4371
MGIMGI:2652836
EntrezGene (human)GeneID:26205
(SSTAR profile)
EntrezGene (mouse)GeneID:229004
(SSTAR profile)
UniProt ID (human)GMEB2_HUMAN
UniProt ID (mouse)GMEB2_MOUSE
UniProt AC (human)Q9UKD1
(TFClass)
UniProt AC (mouse)P58929
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 1
PCM
ACGT
0137.0411.0244.0309.0
02103.012.0315.0571.0
03315.06.0674.06.0
049.0987.04.01.0
057.03.0978.013.0
062.01.03.0995.0
0750.0466.0480.05.0
08493.0393.077.038.0
0933.0317.0518.0133.0
PFM
ACGT
010.0370.4110.2440.309
020.1030.0120.3150.57
030.3150.0060.6730.006
040.0090.9860.0040.001
050.0070.0030.9770.013
060.0020.0010.0030.994
070.050.4660.480.005
080.4930.3930.0770.038
090.0330.3170.5170.133
PWM
ACGT
01-1.8730.493-0.0250.21
02-0.878-2.910.2290.821
030.229-3.4850.986-3.485
04-3.1571.367-3.784-4.526
05-3.363-3.9761.358-2.84
06-4.214-4.526-3.9761.375
07-1.5830.6190.648-3.623
080.6750.449-1.163-1.847
09-1.9820.2350.724-0.626
Standard thresholds
P-value Threshold
0.001 5.213335
0.0005 6.09159
0.0001 7.46175