MotifGLIS3.H12INVITRO.1.S.C
Gene (human)GLIS3
(GeneCards)
Gene synonyms (human)ZNF515
Gene (mouse)Glis3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length12
ConsensusbSYGGGGGGKvn
GC content72.94%
Information content (bits; total / per base)12.081 / 1.007
Data sourcesHT-SELEX
Aligned words1618

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.793 0.811 0.61 0.636 0.542 0.558 1.271 1.316 34.824 43.208

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.793 0.782 0.639 0.654 0.565 0.588
best 0.793 0.782 0.639 0.654 0.565 0.588
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyGLI-lile {2.3.3.1} (TFClass)
TFClass IDTFClass: 2.3.3.1.6
HGNCHGNC:28510
MGIMGI:2444289
EntrezGene (human)GeneID:169792
(SSTAR profile)
EntrezGene (mouse)GeneID:226075
(SSTAR profile)
UniProt ID (human)GLIS3_HUMAN
UniProt ID (mouse)GLIS3_MOUSE
UniProt AC (human)Q8NEA6
(TFClass)
UniProt AC (mouse)Q6XP49
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
01205.0680.0215.0518.0
02149.25232.251080.25156.25
03136.0672.00.0810.0
0481.00.01519.018.0
0534.058.01420.0106.0
061.00.01606.011.0
0719.02.01576.021.0
0815.00.01603.00.0
0951.00.01439.0128.0
10114.0140.0344.01020.0
11557.75576.75282.75200.75
12472.5266.5450.5428.5
PFM
ACGT
010.1270.420.1330.32
020.0920.1440.6680.097
030.0840.4150.00.501
040.050.00.9390.011
050.0210.0360.8780.066
060.0010.00.9930.007
070.0120.0010.9740.013
080.0090.00.9910.0
090.0320.00.8890.079
100.070.0870.2130.63
110.3450.3560.1750.124
120.2920.1650.2780.265
PWM
ACGT
01-0.6750.518-0.6280.246
02-0.989-0.5510.979-0.944
03-1.0810.506-5.3940.692
04-1.59-5.3941.32-3.019
05-2.428-1.9151.253-1.326
06-4.961-5.3941.375-3.454
07-2.97-4.661.357-2.878
08-3.183-5.3941.374-5.394
09-2.04-5.3941.266-1.141
10-1.255-1.052-0.1610.922
110.320.353-0.356-0.696
120.155-0.4150.1070.057
Standard thresholds
P-value Threshold
0.001 4.00266
0.0005 5.10356
0.0001 7.31498