GLIS3.H12INVITRO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	GLIS3.H12INVITRO.0.P.C
Gene (human)	GLIS3 (GeneCards)
Gene synonyms (human)	ZNF515
Gene (mouse)	Glis3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	13
Consensus	bSCTGGGRGRbvn
GC content	72.47%
Information content (bits; total / per base)	12.117 / 0.932
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.832	0.837	0.684	0.691	0.656	0.664	1.544	1.584	59.187	65.137

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.679	0.647	0.6	0.589	0.547	0.553
Non-Methyl HT-SELEX, 1 experiments	best	0.679	0.647	0.6	0.589	0.547	0.553

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	GLI-lile {2.3.3.1} (TFClass)
TFClass ID	TFClass: 2.3.3.1.6
HGNC	HGNC:28510
MGI	MGI:2444289
EntrezGene (human)	GeneID:169792 (SSTAR profile)
EntrezGene (mouse)	GeneID:226075 (SSTAR profile)
UniProt ID (human)	GLIS3_HUMAN
UniProt ID (mouse)	GLIS3_MOUSE
UniProt AC (human)	Q8NEA6 (TFClass)
UniProt AC (mouse)	Q6XP49 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	0

PCM	GLIS3.H12INVITRO.0.P.C.pcm
PWM	GLIS3.H12INVITRO.0.P.C.pwm
PFM	GLIS3.H12INVITRO.0.P.C.pfm
Alignment	GLIS3.H12INVITRO.0.P.C.words.tsv
Threshold to P-value map	GLIS3.H12INVITRO.0.P.C.thr
Motif in other formats
JASPAR format	GLIS3.H12INVITRO.0.P.C_jaspar_format.txt
MEME format	GLIS3.H12INVITRO.0.P.C_meme_format.meme
Transfac format	GLIS3.H12INVITRO.0.P.C_transfac_format.txt
Homer format	GLIS3.H12INVITRO.0.P.C_homer_format_0.001.txt GLIS3.H12INVITRO.0.P.C_homer_format_0.0005.txt GLIS3.H12INVITRO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	107.0	489.0	154.0	250.0
02	47.0	778.0	104.0	71.0
03	20.0	891.0	49.0	40.0
04	36.0	19.0	9.0	936.0
05	2.0	4.0	983.0	11.0
06	10.0	8.0	890.0	92.0
07	22.0	1.0	971.0	6.0
08	397.0	2.0	541.0	60.0
09	65.0	2.0	891.0	42.0
10	131.0	102.0	643.0	124.0
11	61.0	460.0	252.0	227.0
12	203.0	447.0	213.0	137.0
13	212.0	218.0	300.0	270.0

PFM

	A	C	G	T
01	0.107	0.489	0.154	0.25
02	0.047	0.778	0.104	0.071
03	0.02	0.891	0.049	0.04
04	0.036	0.019	0.009	0.936
05	0.002	0.004	0.983	0.011
06	0.01	0.008	0.89	0.092
07	0.022	0.001	0.971	0.006
08	0.397	0.002	0.541	0.06
09	0.065	0.002	0.891	0.042
10	0.131	0.102	0.643	0.124
11	0.061	0.46	0.252	0.227
12	0.203	0.447	0.213	0.137
13	0.212	0.218	0.3	0.27

PWM

	A	C	G	T
01	-0.84	0.668	-0.48	0.0
02	-1.642	1.131	-0.867	-1.242
03	-2.45	1.266	-1.602	-1.797
04	-1.898	-2.497	-3.156	1.315
05	-4.213	-3.783	1.364	-2.985
06	-3.066	-3.253	1.265	-0.988
07	-2.362	-4.525	1.352	-3.484
08	0.46	-4.213	0.768	-1.406
09	-1.328	-4.213	1.266	-1.75
10	-0.64	-0.887	0.94	-0.694
11	-1.39	0.607	0.008	-0.096
12	-0.207	0.578	-0.159	-0.596
13	-0.164	-0.136	0.181	0.076

Standard thresholds

P-value	Threshold
0.001	4.10741
0.0005	5.12226
0.0001	7.17667