MotifGLIS3.H12INVITRO.0.P.C
Gene (human)GLIS3
(GeneCards)
Gene synonyms (human)ZNF515
Gene (mouse)Glis3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length13
ConsensusbSCTGGGRGRbvn
GC content72.47%
Information content (bits; total / per base)12.117 / 0.932
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.832 0.837 0.684 0.691 0.656 0.664 1.544 1.584 59.187 65.137

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.679 0.647 0.6 0.589 0.547 0.553
best 0.679 0.647 0.6 0.589 0.547 0.553
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyGLI-lile {2.3.3.1} (TFClass)
TFClass IDTFClass: 2.3.3.1.6
HGNCHGNC:28510
MGIMGI:2444289
EntrezGene (human)GeneID:169792
(SSTAR profile)
EntrezGene (mouse)GeneID:226075
(SSTAR profile)
UniProt ID (human)GLIS3_HUMAN
UniProt ID (mouse)GLIS3_MOUSE
UniProt AC (human)Q8NEA6
(TFClass)
UniProt AC (mouse)Q6XP49
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
01107.0489.0154.0250.0
0247.0778.0104.071.0
0320.0891.049.040.0
0436.019.09.0936.0
052.04.0983.011.0
0610.08.0890.092.0
0722.01.0971.06.0
08397.02.0541.060.0
0965.02.0891.042.0
10131.0102.0643.0124.0
1161.0460.0252.0227.0
12203.0447.0213.0137.0
13212.0218.0300.0270.0
PFM
ACGT
010.1070.4890.1540.25
020.0470.7780.1040.071
030.020.8910.0490.04
040.0360.0190.0090.936
050.0020.0040.9830.011
060.010.0080.890.092
070.0220.0010.9710.006
080.3970.0020.5410.06
090.0650.0020.8910.042
100.1310.1020.6430.124
110.0610.460.2520.227
120.2030.4470.2130.137
130.2120.2180.30.27
PWM
ACGT
01-0.840.668-0.480.0
02-1.6421.131-0.867-1.242
03-2.451.266-1.602-1.797
04-1.898-2.497-3.1561.315
05-4.213-3.7831.364-2.985
06-3.066-3.2531.265-0.988
07-2.362-4.5251.352-3.484
080.46-4.2130.768-1.406
09-1.328-4.2131.266-1.75
10-0.64-0.8870.94-0.694
11-1.390.6070.008-0.096
12-0.2070.578-0.159-0.596
13-0.164-0.1360.1810.076
Standard thresholds
P-value Threshold
0.001 4.10741
0.0005 5.12226
0.0001 7.17667