MotifGLIS1.H12INVIVO.1.P.B
Gene (human)GLIS1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Glis1
Gene synonyms (mouse)Gli5
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length11
ConsensusYSCTGGGRGRb
GC content73.84%
Information content (bits; total / per base)11.075 / 1.007
Data sourcesChIP-Seq
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (12) 0.778 0.819 0.622 0.688 0.684 0.715 1.733 1.834 53.41 131.699

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.863 0.805 0.79 0.747 0.697 0.681
best 0.915 0.864 0.877 0.824 0.789 0.754
Methyl HT-SELEX, 1 experiments median 0.915 0.864 0.877 0.824 0.789 0.754
best 0.915 0.864 0.877 0.824 0.789 0.754
Non-Methyl HT-SELEX, 1 experiments median 0.811 0.746 0.704 0.671 0.605 0.607
best 0.811 0.746 0.704 0.671 0.605 0.607

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.603 0.195 0.292 0.225
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyGLI-lile {2.3.3.1} (TFClass)
TFClass IDTFClass: 2.3.3.1.4
HGNCHGNC:29525
MGIMGI:2386723
EntrezGene (human)GeneID:148979
(SSTAR profile)
EntrezGene (mouse)GeneID:230587
(SSTAR profile)
UniProt ID (human)GLIS1_HUMAN
UniProt ID (mouse)GLIS1_MOUSE
UniProt AC (human)Q8NBF1
(TFClass)
UniProt AC (mouse)Q8K1M4
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
0168.0579.0109.0245.0
0243.0679.0141.0138.0
0316.0803.0136.046.0
0464.050.07.0880.0
0511.05.0965.020.0
066.05.0907.083.0
0718.011.0960.012.0
08421.03.0494.083.0
09119.08.0854.020.0
10148.062.0671.0120.0
1151.0380.0302.0268.0
PFM
ACGT
010.0680.5780.1090.245
020.0430.6780.1410.138
030.0160.8020.1360.046
040.0640.050.0070.879
050.0110.0050.9640.02
060.0060.0050.9060.083
070.0180.0110.9590.012
080.4210.0030.4940.083
090.1190.0080.8530.02
100.1480.0620.670.12
110.0510.380.3020.268
PWM
ACGT
01-1.2850.835-0.822-0.021
02-1.7290.994-0.568-0.59
03-2.6541.161-0.604-1.664
04-1.344-1.583-3.3631.253
05-2.986-3.6231.345-2.451
06-3.485-3.6231.283-1.09
07-2.547-2.9861.339-2.91
080.517-3.9760.677-1.09
09-0.736-3.2541.223-2.451
10-0.521-1.3750.982-0.728
11-1.5640.4150.1870.068
Standard thresholds
P-value Threshold
0.001 4.455615
0.0005 5.365
0.0001 7.27864