GLI4.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	GLI4.H12INVITRO.0.P.D
Gene (human)	GLI4 (GeneCards)
Gene synonyms (human)	HKR4
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	YbnbbnYdbChYTCvRKKCYhhb
GC content	55.33%
Information content (bits; total / per base)	11.286 / 0.491
Data sources	ChIP-Seq
Aligned words	998

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.663	0.68	0.531	0.56	0.75	0.764	4.424	4.643	40.509	49.456

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF24-like {2.3.3.10} (TFClass)
TFClass ID	TFClass: 2.3.3.10.4
HGNC	HGNC:4320
MGI
EntrezGene (human)	GeneID:2738 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	GLI4_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P10075 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	GLI4.H12INVITRO.0.P.D.pcm
PWM	GLI4.H12INVITRO.0.P.D.pwm
PFM	GLI4.H12INVITRO.0.P.D.pfm
Alignment	GLI4.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	GLI4.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	GLI4.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	GLI4.H12INVITRO.0.P.D_meme_format.meme
Transfac format	GLI4.H12INVITRO.0.P.D_transfac_format.txt
Homer format	GLI4.H12INVITRO.0.P.D_homer_format_0.001.txt GLI4.H12INVITRO.0.P.D_homer_format_0.0005.txt GLI4.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	58.0	208.0	117.0	615.0
02	85.0	154.0	439.0	320.0
03	313.0	178.0	257.0	250.0
04	128.0	216.0	309.0	345.0
05	34.0	445.0	334.0	185.0
06	240.0	329.0	129.0	300.0
07	42.0	239.0	114.0	603.0
08	103.0	72.0	464.0	359.0
09	60.0	305.0	505.0	128.0
10	30.0	834.0	54.0	80.0
11	525.0	225.0	104.0	144.0
12	26.0	190.0	62.0	720.0
13	19.0	154.0	17.0	808.0
14	18.0	895.0	50.0	35.0
15	474.0	253.0	188.0	83.0
16	577.0	132.0	227.0	62.0
17	74.0	103.0	632.0	189.0
18	25.0	47.0	614.0	312.0
19	56.0	818.0	36.0	88.0
20	84.0	688.0	39.0	187.0
21	176.0	459.0	100.0	263.0
22	164.0	304.0	116.0	414.0
23	100.0	251.0	295.0	352.0

PFM

	A	C	G	T
01	0.058	0.208	0.117	0.616
02	0.085	0.154	0.44	0.321
03	0.314	0.178	0.258	0.251
04	0.128	0.216	0.31	0.346
05	0.034	0.446	0.335	0.185
06	0.24	0.33	0.129	0.301
07	0.042	0.239	0.114	0.604
08	0.103	0.072	0.465	0.36
09	0.06	0.306	0.506	0.128
10	0.03	0.836	0.054	0.08
11	0.526	0.225	0.104	0.144
12	0.026	0.19	0.062	0.721
13	0.019	0.154	0.017	0.81
14	0.018	0.897	0.05	0.035
15	0.475	0.254	0.188	0.083
16	0.578	0.132	0.227	0.062
17	0.074	0.103	0.633	0.189
18	0.025	0.047	0.615	0.313
19	0.056	0.82	0.036	0.088
20	0.084	0.689	0.039	0.187
21	0.176	0.46	0.1	0.264
22	0.164	0.305	0.116	0.415
23	0.1	0.252	0.296	0.353

PWM

	A	C	G	T
01	-1.437	-0.181	-0.75	0.898
02	-1.064	-0.478	0.562	0.247
03	0.225	-0.335	0.029	0.002
04	-0.661	-0.143	0.213	0.322
05	-1.95	0.576	0.29	-0.297
06	-0.039	0.275	-0.653	0.183
07	-1.748	-0.043	-0.775	0.878
08	-0.875	-1.226	0.617	0.362
09	-1.404	0.2	0.702	-0.661
10	-2.069	1.202	-1.506	-1.123
11	0.74	-0.103	-0.865	-0.545
12	-2.204	-0.27	-1.372	1.055
13	-2.495	-0.478	-2.596	1.17
14	-2.544	1.272	-1.58	-1.923
15	0.638	0.014	-0.281	-1.087
16	0.834	-0.631	-0.094	-1.372
17	-1.199	-0.875	0.925	-0.276
18	-2.241	-1.64	0.896	0.222
19	-1.471	1.183	-1.896	-1.03
20	-1.075	1.01	-1.819	-0.286
21	-0.346	0.606	-0.904	0.052
22	-0.416	0.196	-0.758	0.504
23	-0.904	0.006	0.166	0.342

Standard thresholds

P-value	Threshold
0.001	4.43066
0.0005	5.27661
0.0001	7.06111