MotifGLI1.H12INVITRO.0.P.D
Gene (human)GLI1
(GeneCards)
Gene synonyms (human)GLI
Gene (mouse)Gli1
Gene synonyms (mouse)Gli
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusbSTGGGTGGYCh
GC content66.34%
Information content (bits; total / per base)14.659 / 1.222
Data sourcesChIP-Seq
Aligned words1002

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.954 0.979 0.925 0.959 0.956 0.976 5.03 5.525 212.066 273.357
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyGLI-lile {2.3.3.1} (TFClass)
TFClass IDTFClass: 2.3.3.1.1
HGNCHGNC:4317
MGIMGI:95727
EntrezGene (human)GeneID:2735
(SSTAR profile)
EntrezGene (mouse)GeneID:14632
(SSTAR profile)
UniProt ID (human)GLI1_HUMAN
UniProt ID (mouse)GLI1_MOUSE
UniProt AC (human)P08151
(TFClass)
UniProt AC (mouse)P47806
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01100.0429.0145.0328.0
0237.0438.0416.0111.0
0365.053.08.0876.0
0432.010.0929.031.0
054.00.0798.0200.0
060.03.0999.00.0
0758.06.08.0930.0
084.01.0997.00.0
094.02.0982.014.0
101.0243.0104.0654.0
1145.0923.014.020.0
1290.0411.058.0443.0
PFM
ACGT
010.10.4280.1450.327
020.0370.4370.4150.111
030.0650.0530.0080.874
040.0320.010.9270.031
050.0040.00.7960.2
060.00.0030.9970.0
070.0580.0060.0080.928
080.0040.0010.9950.0
090.0040.0020.980.014
100.0010.2430.1040.653
110.0450.9210.0140.02
120.090.410.0580.442
PWM
ACGT
01-0.9080.535-0.5420.268
02-1.8740.5560.504-0.805
03-1.33-1.528-3.2551.247
04-2.012-3.0681.306-2.042
05-3.785-4.9841.154-0.223
06-4.984-3.9771.378-4.984
07-1.441-3.486-3.2551.307
08-3.785-4.5271.376-4.984
09-3.785-4.2151.361-2.775
10-4.527-0.03-0.8690.955
11-1.6861.299-2.775-2.452
12-1.0120.492-1.4410.567
Standard thresholds
P-value Threshold
0.001 2.76216
0.0005 4.02927
0.0001 6.643735