| Motif | GLI1.H12INVITRO.0.P.D |
| Gene (human) | GLI1 (GeneCards) |
| Gene synonyms (human) | GLI |
| Gene (mouse) | Gli1 |
| Gene synonyms (mouse) | Gli |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | GLI1.H12INVITRO.0.P.D |
| Gene (human) | GLI1 (GeneCards) |
| Gene synonyms (human) | GLI |
| Gene (mouse) | Gli1 |
| Gene synonyms (mouse) | Gli |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | bSTGGGTGGYCh |
| GC content | 66.34% |
| Information content (bits; total / per base) | 14.659 / 1.222 |
| Data sources | ChIP-Seq |
| Aligned words | 1002 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 1 (7) | 0.954 | 0.979 | 0.925 | 0.959 | 0.956 | 0.976 | 5.03 | 5.525 | 212.066 | 273.357 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | GLI-lile {2.3.3.1} (TFClass) |
| TFClass ID | TFClass: 2.3.3.1.1 |
| HGNC | HGNC:4317 |
| MGI | MGI:95727 |
| EntrezGene (human) | GeneID:2735 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:14632 (SSTAR profile) |
| UniProt ID (human) | GLI1_HUMAN |
| UniProt ID (mouse) | GLI1_MOUSE |
| UniProt AC (human) | P08151 (TFClass) |
| UniProt AC (mouse) | P47806 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | GLI1.H12INVITRO.0.P.D.pcm |
| PWM | GLI1.H12INVITRO.0.P.D.pwm |
| PFM | GLI1.H12INVITRO.0.P.D.pfm |
| Alignment | GLI1.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | GLI1.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | GLI1.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | GLI1.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | GLI1.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 100.0 | 429.0 | 145.0 | 328.0 |
| 02 | 37.0 | 438.0 | 416.0 | 111.0 |
| 03 | 65.0 | 53.0 | 8.0 | 876.0 |
| 04 | 32.0 | 10.0 | 929.0 | 31.0 |
| 05 | 4.0 | 0.0 | 798.0 | 200.0 |
| 06 | 0.0 | 3.0 | 999.0 | 0.0 |
| 07 | 58.0 | 6.0 | 8.0 | 930.0 |
| 08 | 4.0 | 1.0 | 997.0 | 0.0 |
| 09 | 4.0 | 2.0 | 982.0 | 14.0 |
| 10 | 1.0 | 243.0 | 104.0 | 654.0 |
| 11 | 45.0 | 923.0 | 14.0 | 20.0 |
| 12 | 90.0 | 411.0 | 58.0 | 443.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.1 | 0.428 | 0.145 | 0.327 |
| 02 | 0.037 | 0.437 | 0.415 | 0.111 |
| 03 | 0.065 | 0.053 | 0.008 | 0.874 |
| 04 | 0.032 | 0.01 | 0.927 | 0.031 |
| 05 | 0.004 | 0.0 | 0.796 | 0.2 |
| 06 | 0.0 | 0.003 | 0.997 | 0.0 |
| 07 | 0.058 | 0.006 | 0.008 | 0.928 |
| 08 | 0.004 | 0.001 | 0.995 | 0.0 |
| 09 | 0.004 | 0.002 | 0.98 | 0.014 |
| 10 | 0.001 | 0.243 | 0.104 | 0.653 |
| 11 | 0.045 | 0.921 | 0.014 | 0.02 |
| 12 | 0.09 | 0.41 | 0.058 | 0.442 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.908 | 0.535 | -0.542 | 0.268 |
| 02 | -1.874 | 0.556 | 0.504 | -0.805 |
| 03 | -1.33 | -1.528 | -3.255 | 1.247 |
| 04 | -2.012 | -3.068 | 1.306 | -2.042 |
| 05 | -3.785 | -4.984 | 1.154 | -0.223 |
| 06 | -4.984 | -3.977 | 1.378 | -4.984 |
| 07 | -1.441 | -3.486 | -3.255 | 1.307 |
| 08 | -3.785 | -4.527 | 1.376 | -4.984 |
| 09 | -3.785 | -4.215 | 1.361 | -2.775 |
| 10 | -4.527 | -0.03 | -0.869 | 0.955 |
| 11 | -1.686 | 1.299 | -2.775 | -2.452 |
| 12 | -1.012 | 0.492 | -1.441 | 0.567 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.76216 |
| 0.0005 | 4.02927 |
| 0.0001 | 6.643735 |