MotifGFI1B.H12INVIVO.1.S.C
Gene (human)GFI1B
(GeneCards)
Gene synonyms (human)
Gene (mouse)Gfi1b
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length21
ConsensusdWdKRvvndGCMGTGATTTvh
GC content43.13%
Information content (bits; total / per base)19.509 / 0.929
Data sourcesHT-SELEX
Aligned words8816

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 6 (41) 0.836 0.871 0.722 0.788 0.817 0.861 2.689 3.254 98.18 220.921
Mouse 5 (27) 0.789 0.891 0.685 0.804 0.769 0.869 2.424 3.073 90.071 206.569

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.967 0.967 0.774 0.8 0.625 0.673
best 0.998 0.997 0.837 0.856 0.662 0.71
Methyl HT-SELEX, 1 experiments median 0.937 0.938 0.711 0.745 0.589 0.636
best 0.937 0.938 0.711 0.745 0.589 0.636
Non-Methyl HT-SELEX, 1 experiments median 0.998 0.997 0.837 0.856 0.662 0.71
best 0.998 0.997 0.837 0.856 0.662 0.71
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyGFI1 {2.3.3.21} (TFClass)
TFClass IDTFClass: 2.3.3.21.2
HGNCHGNC:4238
MGIMGI:1276578
EntrezGene (human)GeneID:8328
(SSTAR profile)
EntrezGene (mouse)GeneID:14582
(SSTAR profile)
UniProt ID (human)GFI1B_HUMAN
UniProt ID (mouse)GFI1B_MOUSE
UniProt AC (human)Q5VTD9
(TFClass)
UniProt AC (mouse)O70237
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 6 human, 5 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011779.251687.253651.251698.25
026340.5446.5999.51029.5
031492.0790.05053.01481.0
04926.0619.01233.06038.0
051122.01050.05879.0765.0
063515.02614.01957.0730.0
073062.01515.02891.01348.0
082039.01789.02957.02031.0
091479.01021.01107.05209.0
10819.092.07738.0167.0
11137.08364.067.0248.0
126412.01309.026.01069.0
136.02243.06496.071.0
1478.03.04.08731.0
150.00.08816.00.0
168816.00.00.00.0
170.02.02.08812.0
182.00.03.08811.0
1998.0102.01053.07563.0
204345.751506.751684.751278.75
211868.751709.751363.753873.75
PFM
ACGT
010.2020.1910.4140.193
020.7190.0510.1130.117
030.1690.090.5730.168
040.1050.070.140.685
050.1270.1190.6670.087
060.3990.2970.2220.083
070.3470.1720.3280.153
080.2310.2030.3350.23
090.1680.1160.1260.591
100.0930.010.8780.019
110.0160.9490.0080.028
120.7270.1480.0030.121
130.0010.2540.7370.008
140.0090.00.00.99
150.00.01.00.0
161.00.00.00.0
170.00.00.01.0
180.00.00.00.999
190.0110.0120.1190.858
200.4930.1710.1910.145
210.2120.1940.1550.439
PWM
ACGT
01-0.214-0.2670.504-0.26
021.056-1.593-0.79-0.76
03-0.39-1.0240.829-0.397
04-0.866-1.267-0.581.007
05-0.674-0.740.98-1.056
060.4660.17-0.119-1.103
070.329-0.3740.271-0.491
08-0.078-0.2080.294-0.082
09-0.398-0.768-0.6880.86
10-0.988-3.1531.255-2.568
11-2.7631.333-3.461-2.177
121.067-0.52-4.357-0.722
13-5.5860.0181.08-3.405
14-3.314-6.037-5.8631.376
15-6.879-6.8791.386-6.879
161.386-6.879-6.879-6.879
17-6.879-6.247-6.2471.385
18-6.247-6.879-6.0371.385
19-3.091-3.052-0.7381.232
200.678-0.38-0.268-0.544
21-0.165-0.254-0.4790.564
Standard thresholds
P-value Threshold
0.001 -1.79499
0.0005 0.08011
0.0001 3.98221