| Motif | GFI1B.H12INVITRO.1.S.C |
| Gene (human) | GFI1B (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Gfi1b |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | C |
| Motif | GFI1B.H12INVITRO.1.S.C |
| Gene (human) | GFI1B (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Gfi1b |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | C |
| Motif length | 21 |
| Consensus | dWdKRvvndGCMGTGATTTvh |
| GC content | 43.18% |
| Information content (bits; total / per base) | 19.07 / 0.908 |
| Data sources | HT-SELEX |
| Aligned words | 9041 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 6 (41) | 0.822 | 0.858 | 0.706 | 0.775 | 0.809 | 0.854 | 2.654 | 3.208 | 100.495 | 224.77 |
| Mouse | 5 (27) | 0.788 | 0.884 | 0.68 | 0.793 | 0.766 | 0.862 | 2.404 | 3.032 | 89.387 | 206.509 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.967 | 0.967 | 0.776 | 0.801 | 0.629 | 0.674 |
| best | 0.998 | 0.997 | 0.839 | 0.857 | 0.666 | 0.712 | |
| Methyl HT-SELEX, 1 experiments | median | 0.937 | 0.937 | 0.713 | 0.745 | 0.592 | 0.637 |
| best | 0.937 | 0.937 | 0.713 | 0.745 | 0.592 | 0.637 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.998 | 0.997 | 0.839 | 0.857 | 0.666 | 0.712 |
| best | 0.998 | 0.997 | 0.839 | 0.857 | 0.666 | 0.712 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | GFI1 {2.3.3.21} (TFClass) |
| TFClass ID | TFClass: 2.3.3.21.2 |
| HGNC | HGNC:4238 |
| MGI | MGI:1276578 |
| EntrezGene (human) | GeneID:8328 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:14582 (SSTAR profile) |
| UniProt ID (human) | GFI1B_HUMAN |
| UniProt ID (mouse) | GFI1B_MOUSE |
| UniProt AC (human) | Q5VTD9 (TFClass) |
| UniProt AC (mouse) | O70237 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 6 human, 5 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | GFI1B.H12INVITRO.1.S.C.pcm |
| PWM | GFI1B.H12INVITRO.1.S.C.pwm |
| PFM | GFI1B.H12INVITRO.1.S.C.pfm |
| Alignment | GFI1B.H12INVITRO.1.S.C.words.tsv |
| Threshold to P-value map | GFI1B.H12INVITRO.1.S.C.thr |
| Motif in other formats | |
| JASPAR format | GFI1B.H12INVITRO.1.S.C_jaspar_format.txt |
| MEME format | GFI1B.H12INVITRO.1.S.C_meme_format.meme |
| Transfac format | GFI1B.H12INVITRO.1.S.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1843.0 | 1740.0 | 3706.0 | 1752.0 |
| 02 | 6402.5 | 485.5 | 1066.5 | 1086.5 |
| 03 | 1556.0 | 840.0 | 5100.0 | 1545.0 |
| 04 | 980.0 | 651.0 | 1305.0 | 6105.0 |
| 05 | 1170.0 | 1108.0 | 5946.0 | 817.0 |
| 06 | 3563.0 | 2678.0 | 2020.0 | 780.0 |
| 07 | 3124.0 | 1567.0 | 2939.0 | 1411.0 |
| 08 | 2095.0 | 1830.0 | 3021.0 | 2095.0 |
| 09 | 1535.0 | 1068.0 | 1168.0 | 5270.0 |
| 10 | 889.0 | 114.0 | 7824.0 | 214.0 |
| 11 | 158.0 | 8506.0 | 100.0 | 277.0 |
| 12 | 6487.0 | 1379.0 | 43.0 | 1132.0 |
| 13 | 13.0 | 2283.0 | 6660.0 | 85.0 |
| 14 | 101.0 | 6.0 | 9.0 | 8925.0 |
| 15 | 0.0 | 1.0 | 9037.0 | 3.0 |
| 16 | 9020.0 | 16.0 | 5.0 | 0.0 |
| 17 | 7.0 | 9.0 | 11.0 | 9014.0 |
| 18 | 12.0 | 8.0 | 13.0 | 9008.0 |
| 19 | 115.0 | 115.0 | 1110.0 | 7701.0 |
| 20 | 4416.75 | 1574.75 | 1736.75 | 1312.75 |
| 21 | 1925.25 | 1762.25 | 1412.25 | 3941.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.204 | 0.192 | 0.41 | 0.194 |
| 02 | 0.708 | 0.054 | 0.118 | 0.12 |
| 03 | 0.172 | 0.093 | 0.564 | 0.171 |
| 04 | 0.108 | 0.072 | 0.144 | 0.675 |
| 05 | 0.129 | 0.123 | 0.658 | 0.09 |
| 06 | 0.394 | 0.296 | 0.223 | 0.086 |
| 07 | 0.346 | 0.173 | 0.325 | 0.156 |
| 08 | 0.232 | 0.202 | 0.334 | 0.232 |
| 09 | 0.17 | 0.118 | 0.129 | 0.583 |
| 10 | 0.098 | 0.013 | 0.865 | 0.024 |
| 11 | 0.017 | 0.941 | 0.011 | 0.031 |
| 12 | 0.718 | 0.153 | 0.005 | 0.125 |
| 13 | 0.001 | 0.253 | 0.737 | 0.009 |
| 14 | 0.011 | 0.001 | 0.001 | 0.987 |
| 15 | 0.0 | 0.0 | 1.0 | 0.0 |
| 16 | 0.998 | 0.002 | 0.001 | 0.0 |
| 17 | 0.001 | 0.001 | 0.001 | 0.997 |
| 18 | 0.001 | 0.001 | 0.001 | 0.996 |
| 19 | 0.013 | 0.013 | 0.123 | 0.852 |
| 20 | 0.489 | 0.174 | 0.192 | 0.145 |
| 21 | 0.213 | 0.195 | 0.156 | 0.436 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.204 | -0.261 | 0.494 | -0.254 |
| 02 | 1.041 | -1.534 | -0.75 | -0.731 |
| 03 | -0.373 | -0.988 | 0.813 | -0.38 |
| 04 | -0.834 | -1.242 | -0.549 | 0.993 |
| 05 | -0.658 | -0.712 | 0.967 | -1.016 |
| 06 | 0.455 | 0.169 | -0.112 | -1.062 |
| 07 | 0.323 | -0.366 | 0.262 | -0.471 |
| 08 | -0.076 | -0.211 | 0.29 | -0.076 |
| 09 | -0.386 | -0.749 | -0.659 | 0.846 |
| 10 | -0.932 | -2.968 | 1.241 | -2.348 |
| 11 | -2.647 | 1.325 | -3.097 | -2.092 |
| 12 | 1.054 | -0.493 | -3.911 | -0.69 |
| 13 | -4.998 | 0.01 | 1.08 | -3.255 |
| 14 | -3.087 | -5.611 | -5.301 | 1.373 |
| 15 | -6.901 | -6.537 | 1.385 | -6.061 |
| 16 | 1.383 | -4.819 | -5.739 | -6.901 |
| 17 | -5.497 | -5.301 | -5.138 | 1.383 |
| 18 | -5.066 | -5.394 | -4.998 | 1.382 |
| 19 | -2.96 | -2.96 | -0.71 | 1.225 |
| 20 | 0.669 | -0.361 | -0.263 | -0.543 |
| 21 | -0.16 | -0.249 | -0.47 | 0.556 |
| P-value | Threshold |
|---|---|
| 0.001 | -0.75269 |
| 0.0005 | 0.94761 |
| 0.0001 | 4.48946 |