| Motif | GFI1.H12INVITRO.0.PSM.A |
| Gene (human) | GFI1 (GeneCards) |
| Gene synonyms (human) | ZNF163 |
| Gene (mouse) | Gfi1 |
| Gene synonyms (mouse) | Gfi-1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | GFI1.H12INVITRO.0.PSM.A |
| Gene (human) | GFI1 (GeneCards) |
| Gene synonyms (human) | ZNF163 |
| Gene (mouse) | Gfi1 |
| Gene synonyms (mouse) | Gfi-1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 18 |
| Consensus | dvnnndGCMGTGATTKvn |
| GC content | 46.27% |
| Information content (bits; total / per base) | 15.901 / 0.883 |
| Data sources | ChIP-Seq + HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9991 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (15) | 0.818 | 0.89 | 0.745 | 0.825 | 0.813 | 0.877 | 3.125 | 3.457 | 118.886 | 255.886 |
| Mouse | 5 (31) | 0.75 | 0.889 | 0.627 | 0.807 | 0.761 | 0.87 | 2.453 | 3.167 | 81.301 | 246.076 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.999 | 0.999 | 0.999 | 0.998 | 0.994 | 0.992 |
| best | 0.999 | 0.999 | 0.999 | 0.998 | 0.995 | 0.993 | |
| Methyl HT-SELEX, 1 experiments | median | 0.999 | 0.999 | 0.999 | 0.998 | 0.993 | 0.991 |
| best | 0.999 | 0.999 | 0.999 | 0.998 | 0.993 | 0.991 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.999 | 0.999 | 0.999 | 0.998 | 0.995 | 0.993 |
| best | 0.999 | 0.999 | 0.999 | 0.998 | 0.995 | 0.993 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.733 | 0.562 | 0.762 | 0.59 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | GFI1 {2.3.3.21} (TFClass) |
| TFClass ID | TFClass: 2.3.3.21.1 |
| HGNC | HGNC:4237 |
| MGI | MGI:103170 |
| EntrezGene (human) | GeneID:2672 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:14581 (SSTAR profile) |
| UniProt ID (human) | GFI1_HUMAN |
| UniProt ID (mouse) | GFI1_MOUSE |
| UniProt AC (human) | Q99684 (TFClass) |
| UniProt AC (mouse) | P70338 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 5 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | GFI1.H12INVITRO.0.PSM.A.pcm |
| PWM | GFI1.H12INVITRO.0.PSM.A.pwm |
| PFM | GFI1.H12INVITRO.0.PSM.A.pfm |
| Alignment | GFI1.H12INVITRO.0.PSM.A.words.tsv |
| Threshold to P-value map | GFI1.H12INVITRO.0.PSM.A.thr |
| Motif in other formats | |
| JASPAR format | GFI1.H12INVITRO.0.PSM.A_jaspar_format.txt |
| MEME format | GFI1.H12INVITRO.0.PSM.A_meme_format.meme |
| Transfac format | GFI1.H12INVITRO.0.PSM.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1463.0 | 1024.0 | 2349.0 | 5155.0 |
| 02 | 1689.0 | 1629.0 | 5367.0 | 1306.0 |
| 03 | 3205.0 | 2746.0 | 2860.0 | 1180.0 |
| 04 | 2700.0 | 1831.0 | 3667.0 | 1793.0 |
| 05 | 1658.0 | 2042.0 | 3913.0 | 2378.0 |
| 06 | 1666.0 | 1401.0 | 2318.0 | 4606.0 |
| 07 | 1254.0 | 214.0 | 8121.0 | 402.0 |
| 08 | 283.0 | 8963.0 | 271.0 | 474.0 |
| 09 | 5971.0 | 2450.0 | 62.0 | 1508.0 |
| 10 | 5.0 | 1415.0 | 8471.0 | 100.0 |
| 11 | 178.0 | 8.0 | 28.0 | 9777.0 |
| 12 | 21.0 | 8.0 | 9960.0 | 2.0 |
| 13 | 9899.0 | 65.0 | 15.0 | 12.0 |
| 14 | 34.0 | 26.0 | 56.0 | 9875.0 |
| 15 | 32.0 | 27.0 | 45.0 | 9887.0 |
| 16 | 231.0 | 219.0 | 2116.0 | 7425.0 |
| 17 | 3911.75 | 2126.75 | 2759.75 | 1192.75 |
| 18 | 2556.5 | 2095.5 | 2539.5 | 2799.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.146 | 0.102 | 0.235 | 0.516 |
| 02 | 0.169 | 0.163 | 0.537 | 0.131 |
| 03 | 0.321 | 0.275 | 0.286 | 0.118 |
| 04 | 0.27 | 0.183 | 0.367 | 0.179 |
| 05 | 0.166 | 0.204 | 0.392 | 0.238 |
| 06 | 0.167 | 0.14 | 0.232 | 0.461 |
| 07 | 0.126 | 0.021 | 0.813 | 0.04 |
| 08 | 0.028 | 0.897 | 0.027 | 0.047 |
| 09 | 0.598 | 0.245 | 0.006 | 0.151 |
| 10 | 0.001 | 0.142 | 0.848 | 0.01 |
| 11 | 0.018 | 0.001 | 0.003 | 0.979 |
| 12 | 0.002 | 0.001 | 0.997 | 0.0 |
| 13 | 0.991 | 0.007 | 0.002 | 0.001 |
| 14 | 0.003 | 0.003 | 0.006 | 0.988 |
| 15 | 0.003 | 0.003 | 0.005 | 0.99 |
| 16 | 0.023 | 0.022 | 0.212 | 0.743 |
| 17 | 0.392 | 0.213 | 0.276 | 0.119 |
| 18 | 0.256 | 0.21 | 0.254 | 0.28 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.534 | -0.89 | -0.061 | 0.724 |
| 02 | -0.391 | -0.427 | 0.764 | -0.648 |
| 03 | 0.249 | 0.095 | 0.135 | -0.749 |
| 04 | 0.078 | -0.31 | 0.384 | -0.331 |
| 05 | -0.409 | -0.201 | 0.449 | -0.049 |
| 06 | -0.405 | -0.577 | -0.075 | 0.612 |
| 07 | -0.688 | -2.447 | 1.178 | -1.822 |
| 08 | -2.171 | 1.277 | -2.213 | -1.658 |
| 09 | 0.871 | -0.019 | -3.66 | -0.504 |
| 10 | -5.836 | -0.568 | 1.221 | -3.196 |
| 11 | -2.629 | -5.492 | -4.413 | 1.364 |
| 12 | -4.676 | -5.492 | 1.382 | -6.365 |
| 13 | 1.376 | -3.615 | -4.973 | -5.164 |
| 14 | -4.232 | -4.481 | -3.758 | 1.374 |
| 15 | -4.289 | -4.446 | -3.968 | 1.375 |
| 16 | -2.372 | -2.425 | -0.166 | 1.089 |
| 17 | 0.448 | -0.161 | 0.1 | -0.738 |
| 18 | 0.023 | -0.175 | 0.017 | 0.114 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.59821 |
| 0.0005 | 3.03951 |
| 0.0001 | 6.03646 |