| Motif | GCM1.H12RSNP.0.S.B |
| Gene (human) | GCM1 (GeneCards) |
| Gene synonyms (human) | GCMA |
| Gene (mouse) | Gcm1 |
| Gene synonyms (mouse) | Gcma |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | GCM1.H12RSNP.0.S.B |
| Gene (human) | GCM1 (GeneCards) |
| Gene synonyms (human) | GCMA |
| Gene (mouse) | Gcm1 |
| Gene synonyms (mouse) | Gcma |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 10 |
| Consensus | hRCCCGCAYb |
| GC content | 63.02% |
| Information content (bits; total / per base) | 13.28 / 1.328 |
| Data sources | HT-SELEX |
| Aligned words | 707 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 5 experiments | median | 0.937 | 0.92 | 0.885 | 0.844 | 0.802 | 0.77 |
| best | 0.996 | 0.994 | 0.991 | 0.987 | 0.929 | 0.926 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.824 | 0.732 | 0.757 | 0.498 |
| batch 2 | 0.675 | 0.052 | 0.733 | 0.52 |
| TF superclass | beta-Hairpin exposed by an alpha/beta-scaffold {7} (TFClass) |
| TF class | GCM domain factors {7.2} (TFClass) |
| TF family | GCM {7.2.1} (TFClass) |
| TF subfamily | {7.2.1.0} (TFClass) |
| TFClass ID | TFClass: 7.2.1.0.1 |
| HGNC | HGNC:4197 |
| MGI | MGI:108045 |
| EntrezGene (human) | GeneID:8521 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:14531 (SSTAR profile) |
| UniProt ID (human) | GCM1_HUMAN |
| UniProt ID (mouse) | GCM1_MOUSE |
| UniProt AC (human) | Q9NP62 (TFClass) |
| UniProt AC (mouse) | P70348 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 5 |
| Methyl-HT-SELEX | 0 |
| PCM | GCM1.H12RSNP.0.S.B.pcm |
| PWM | GCM1.H12RSNP.0.S.B.pwm |
| PFM | GCM1.H12RSNP.0.S.B.pfm |
| Alignment | GCM1.H12RSNP.0.S.B.words.tsv |
| Threshold to P-value map | GCM1.H12RSNP.0.S.B.thr |
| Motif in other formats | |
| JASPAR format | GCM1.H12RSNP.0.S.B_jaspar_format.txt |
| MEME format | GCM1.H12RSNP.0.S.B_meme_format.meme |
| Transfac format | GCM1.H12RSNP.0.S.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 149.75 | 154.75 | 99.75 | 302.75 |
| 02 | 539.25 | 22.25 | 100.25 | 45.25 |
| 03 | 0.0 | 707.0 | 0.0 | 0.0 |
| 04 | 0.0 | 707.0 | 0.0 | 0.0 |
| 05 | 64.0 | 643.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 700.0 | 7.0 |
| 07 | 0.0 | 674.0 | 0.0 | 33.0 |
| 08 | 705.0 | 0.0 | 0.0 | 2.0 |
| 09 | 28.0 | 89.0 | 42.0 | 548.0 |
| 10 | 87.75 | 294.75 | 221.75 | 102.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.212 | 0.219 | 0.141 | 0.428 |
| 02 | 0.763 | 0.031 | 0.142 | 0.064 |
| 03 | 0.0 | 1.0 | 0.0 | 0.0 |
| 04 | 0.0 | 1.0 | 0.0 | 0.0 |
| 05 | 0.091 | 0.909 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.99 | 0.01 |
| 07 | 0.0 | 0.953 | 0.0 | 0.047 |
| 08 | 0.997 | 0.0 | 0.0 | 0.003 |
| 09 | 0.04 | 0.126 | 0.059 | 0.775 |
| 10 | 0.124 | 0.417 | 0.314 | 0.145 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.164 | -0.132 | -0.565 | 0.534 |
| 02 | 1.109 | -2.011 | -0.56 | -1.336 |
| 03 | -4.689 | 1.379 | -4.689 | -4.689 |
| 04 | -4.689 | 1.379 | -4.689 | -4.689 |
| 05 | -1.0 | 1.285 | -4.689 | -4.689 |
| 06 | -4.689 | -4.689 | 1.369 | -3.028 |
| 07 | -4.689 | 1.332 | -4.689 | -1.639 |
| 08 | 1.377 | -4.689 | -4.689 | -3.892 |
| 09 | -1.795 | -0.677 | -1.408 | 1.125 |
| 10 | -0.691 | 0.508 | 0.225 | -0.536 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.053205 |
| 0.0005 | 4.451895 |
| 0.0001 | 7.298215 |