| Motif | GCM1.H12INVITRO.0.S.B |
| Gene (human) | GCM1 (GeneCards) |
| Gene synonyms (human) | GCMA |
| Gene (mouse) | Gcm1 |
| Gene synonyms (mouse) | Gcma |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | GCM1.H12INVITRO.0.S.B |
| Gene (human) | GCM1 (GeneCards) |
| Gene synonyms (human) | GCMA |
| Gene (mouse) | Gcm1 |
| Gene synonyms (mouse) | Gcma |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 11 |
| Consensus | nhRCCCGCAYn |
| GC content | 62.76% |
| Information content (bits; total / per base) | 12.934 / 1.176 |
| Data sources | HT-SELEX |
| Aligned words | 7686 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 5 experiments | median | 0.941 | 0.925 | 0.889 | 0.849 | 0.813 | 0.779 |
| best | 0.997 | 0.995 | 0.992 | 0.989 | 0.933 | 0.931 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.786 | 0.718 | 0.741 | 0.483 |
| batch 2 | 0.665 | 0.058 | 0.683 | 0.495 |
| TF superclass | beta-Hairpin exposed by an alpha/beta-scaffold {7} (TFClass) |
| TF class | GCM domain factors {7.2} (TFClass) |
| TF family | GCM {7.2.1} (TFClass) |
| TF subfamily | {7.2.1.0} (TFClass) |
| TFClass ID | TFClass: 7.2.1.0.1 |
| HGNC | HGNC:4197 |
| MGI | MGI:108045 |
| EntrezGene (human) | GeneID:8521 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:14531 (SSTAR profile) |
| UniProt ID (human) | GCM1_HUMAN |
| UniProt ID (mouse) | GCM1_MOUSE |
| UniProt AC (human) | Q9NP62 (TFClass) |
| UniProt AC (mouse) | P70348 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 5 |
| Methyl-HT-SELEX | 0 |
| PCM | GCM1.H12INVITRO.0.S.B.pcm |
| PWM | GCM1.H12INVITRO.0.S.B.pwm |
| PFM | GCM1.H12INVITRO.0.S.B.pfm |
| Alignment | GCM1.H12INVITRO.0.S.B.words.tsv |
| Threshold to P-value map | GCM1.H12INVITRO.0.S.B.thr |
| Motif in other formats | |
| JASPAR format | GCM1.H12INVITRO.0.S.B_jaspar_format.txt |
| MEME format | GCM1.H12INVITRO.0.S.B_meme_format.meme |
| Transfac format | GCM1.H12INVITRO.0.S.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1611.0 | 2051.0 | 2495.0 | 1529.0 |
| 02 | 1233.0 | 1740.0 | 979.0 | 3734.0 |
| 03 | 5057.0 | 269.0 | 1928.0 | 432.0 |
| 04 | 0.0 | 7684.0 | 0.0 | 2.0 |
| 05 | 0.0 | 7686.0 | 0.0 | 0.0 |
| 06 | 219.0 | 7456.0 | 0.0 | 11.0 |
| 07 | 6.0 | 0.0 | 7559.0 | 121.0 |
| 08 | 2.0 | 7014.0 | 5.0 | 665.0 |
| 09 | 7604.0 | 11.0 | 32.0 | 39.0 |
| 10 | 217.75 | 1189.75 | 591.75 | 5686.75 |
| 11 | 1988.5 | 1846.5 | 2524.5 | 1326.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.21 | 0.267 | 0.325 | 0.199 |
| 02 | 0.16 | 0.226 | 0.127 | 0.486 |
| 03 | 0.658 | 0.035 | 0.251 | 0.056 |
| 04 | 0.0 | 1.0 | 0.0 | 0.0 |
| 05 | 0.0 | 1.0 | 0.0 | 0.0 |
| 06 | 0.028 | 0.97 | 0.0 | 0.001 |
| 07 | 0.001 | 0.0 | 0.983 | 0.016 |
| 08 | 0.0 | 0.913 | 0.001 | 0.087 |
| 09 | 0.989 | 0.001 | 0.004 | 0.005 |
| 10 | 0.028 | 0.155 | 0.077 | 0.74 |
| 11 | 0.259 | 0.24 | 0.328 | 0.173 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.176 | 0.065 | 0.261 | -0.228 |
| 02 | -0.443 | -0.099 | -0.673 | 0.664 |
| 03 | 0.967 | -1.959 | 0.003 | -1.488 |
| 04 | -6.757 | 1.385 | -6.757 | -6.118 |
| 05 | -6.757 | 1.385 | -6.757 | -6.757 |
| 06 | -2.163 | 1.355 | -6.757 | -4.979 |
| 07 | -5.453 | -6.757 | 1.369 | -2.748 |
| 08 | -6.118 | 1.294 | -5.583 | -1.059 |
| 09 | 1.375 | -4.979 | -4.029 | -3.843 |
| 10 | -2.168 | -0.479 | -1.175 | 1.084 |
| 11 | 0.034 | -0.04 | 0.273 | -0.37 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.6919 |
| 0.0005 | 4.27607 |
| 0.0001 | 7.363225 |