MotifGCM1.H12CORE.0.S.B
Gene (human)GCM1
(GeneCards)
Gene synonyms (human)GCMA
Gene (mouse)Gcm1
Gene synonyms (mouse)Gcma
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length11
ConsensusnhRCCCGCAYn
GC content62.76%
Information content (bits; total / per base)12.934 / 1.176
Data sourcesHT-SELEX
Aligned words7686

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 5 experiments median 0.941 0.925 0.889 0.849 0.813 0.779
best 0.997 0.995 0.992 0.989 0.933 0.931

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.786 0.718 0.741 0.483
batch 2 0.665 0.058 0.683 0.495
TF superclassbeta-Hairpin exposed by an alpha/beta-scaffold {7} (TFClass)
TF classGCM domain factors {7.2} (TFClass)
TF familyGCM {7.2.1} (TFClass)
TF subfamily {7.2.1.0} (TFClass)
TFClass IDTFClass: 7.2.1.0.1
HGNCHGNC:4197
MGIMGI:108045
EntrezGene (human)GeneID:8521
(SSTAR profile)
EntrezGene (mouse)GeneID:14531
(SSTAR profile)
UniProt ID (human)GCM1_HUMAN
UniProt ID (mouse)GCM1_MOUSE
UniProt AC (human)Q9NP62
(TFClass)
UniProt AC (mouse)P70348
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 0
PCM
ACGT
011611.02051.02495.01529.0
021233.01740.0979.03734.0
035057.0269.01928.0432.0
040.07684.00.02.0
050.07686.00.00.0
06219.07456.00.011.0
076.00.07559.0121.0
082.07014.05.0665.0
097604.011.032.039.0
10217.751189.75591.755686.75
111988.51846.52524.51326.5
PFM
ACGT
010.210.2670.3250.199
020.160.2260.1270.486
030.6580.0350.2510.056
040.01.00.00.0
050.01.00.00.0
060.0280.970.00.001
070.0010.00.9830.016
080.00.9130.0010.087
090.9890.0010.0040.005
100.0280.1550.0770.74
110.2590.240.3280.173
PWM
ACGT
01-0.1760.0650.261-0.228
02-0.443-0.099-0.6730.664
030.967-1.9590.003-1.488
04-6.7571.385-6.757-6.118
05-6.7571.385-6.757-6.757
06-2.1631.355-6.757-4.979
07-5.453-6.7571.369-2.748
08-6.1181.294-5.583-1.059
091.375-4.979-4.029-3.843
10-2.168-0.479-1.1751.084
110.034-0.040.273-0.37
Standard thresholds
P-value Threshold
0.001 2.6919
0.0005 4.27607
0.0001 7.363225