MotifGBX1.H12INVIVO.1.S.D
Gene (human)GBX1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Gbx1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length20
ConsensusbvCTAATTASbbhhWWWWbn
GC content35.11%
Information content (bits; total / per base)16.316 / 0.816
Data sourcesHT-SELEX
Aligned words618

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 4 experiments median 0.987 0.981 0.942 0.932 0.752 0.784
best 0.994 0.99 0.983 0.976 0.816 0.845
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyGBX {3.1.1.11} (TFClass)
TFClass IDTFClass: 3.1.1.11.1
HGNCHGNC:4185
MGIMGI:95667
EntrezGene (human)GeneID:2636
(SSTAR profile)
EntrezGene (mouse)GeneID:231044
(SSTAR profile)
UniProt ID (human)GBX1_HUMAN
UniProt ID (mouse)GBX1_MOUSE
UniProt AC (human)Q14549
(TFClass)
UniProt AC (mouse)P82976
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 0
PCM
ACGT
0184.0305.0138.091.0
02129.5164.5261.562.5
0311.0490.089.028.0
040.056.00.0562.0
05618.00.00.00.0
06618.00.00.00.0
070.00.00.0618.0
080.02.00.0616.0
09476.00.0142.00.0
1055.0183.0367.013.0
1124.0289.0116.0189.0
1270.0216.0256.076.0
13226.0196.086.0110.0
14245.0137.048.0188.0
15216.062.018.0322.0
16329.013.010.0266.0
17377.014.014.0213.0
18195.055.038.0330.0
1967.25106.25145.25299.25
20165.0146.0176.0131.0
PFM
ACGT
010.1360.4940.2230.147
020.210.2660.4230.101
030.0180.7930.1440.045
040.00.0910.00.909
051.00.00.00.0
061.00.00.00.0
070.00.00.01.0
080.00.0030.00.997
090.770.00.230.0
100.0890.2960.5940.021
110.0390.4680.1880.306
120.1130.350.4140.123
130.3660.3170.1390.178
140.3960.2220.0780.304
150.350.10.0290.521
160.5320.0210.0160.43
170.610.0230.0230.345
180.3160.0890.0610.534
190.1090.1720.2350.484
200.2670.2360.2850.212
PWM
ACGT
01-0.6010.675-0.112-0.522
02-0.1750.0620.522-0.89
03-2.5161.147-0.544-1.663
04-4.576-0.997-4.5761.284
051.379-4.576-4.576-4.576
061.379-4.576-4.576-4.576
07-4.576-4.576-4.5761.379
08-4.576-3.768-4.5761.375
091.118-4.576-0.083-4.576
10-1.0140.1680.859-2.369
11-1.8080.621-0.2830.2
12-0.7790.3320.501-0.699
130.3770.236-0.578-0.336
140.457-0.119-1.1460.194
150.332-0.898-2.0750.729
160.75-2.369-2.5990.539
170.886-2.303-2.3030.318
180.231-1.014-1.3720.753
19-0.819-0.37-0.0610.656
200.065-0.0560.129-0.163
Standard thresholds
P-value Threshold
0.001 1.72811
0.0005 3.14851
0.0001 6.10806