MotifGBX1.H12INVIVO.0.S.D
Gene (human)GBX1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Gbx1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusnnvbTAATTRvn
GC content37.06%
Information content (bits; total / per base)11.134 / 0.928
Data sourcesHT-SELEX
Aligned words9537

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 4 experiments median 0.983 0.973 0.945 0.93 0.769 0.793
best 0.99 0.985 0.978 0.968 0.831 0.85
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyGBX {3.1.1.11} (TFClass)
TFClass IDTFClass: 3.1.1.11.1
HGNCHGNC:4185
MGIMGI:95667
EntrezGene (human)GeneID:2636
(SSTAR profile)
EntrezGene (mouse)GeneID:231044
(SSTAR profile)
UniProt ID (human)GBX1_HUMAN
UniProt ID (mouse)GBX1_MOUSE
UniProt AC (human)Q14549
(TFClass)
UniProt AC (mouse)P82976
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 0
PCM
ACGT
012042.752303.752835.752354.75
021610.753401.752625.751898.75
032081.02247.04417.0792.0
04813.04429.01522.02773.0
0516.0119.00.09402.0
069505.00.032.00.0
079537.00.00.00.0
080.01.07.09529.0
096.0339.0252.08940.0
103899.067.05486.085.0
111098.03308.04069.01062.0
121663.252538.252410.252925.25
PFM
ACGT
010.2140.2420.2970.247
020.1690.3570.2750.199
030.2180.2360.4630.083
040.0850.4640.160.291
050.0020.0120.00.986
060.9970.00.0030.0
071.00.00.00.0
080.00.00.0010.999
090.0010.0360.0260.937
100.4090.0070.5750.009
110.1150.3470.4270.111
120.1740.2660.2530.307
PWM
ACGT
01-0.154-0.0340.173-0.012
02-0.3920.3550.096-0.227
03-0.136-0.0590.616-1.1
04-1.0740.619-0.4480.151
05-4.871-2.979-6.9491.371
061.382-6.949-4.243-6.949
071.386-6.949-6.949-6.949
08-6.949-6.586-5.5491.385
09-5.662-1.945-2.2391.321
100.491-3.5390.833-3.308
11-0.7740.3270.534-0.808
12-0.360.0630.0110.204
Standard thresholds
P-value Threshold
0.001 3.91151
0.0005 5.340965
0.0001 7.89333