| Motif | GBX1.H12INVIVO.0.S.D |
| Gene (human) | GBX1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Gbx1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | GBX1.H12INVIVO.0.S.D |
| Gene (human) | GBX1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Gbx1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | nnvbTAATTRvn |
| GC content | 37.06% |
| Information content (bits; total / per base) | 11.134 / 0.928 |
| Data sources | HT-SELEX |
| Aligned words | 9537 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 4 experiments | median | 0.983 | 0.973 | 0.945 | 0.93 | 0.769 | 0.793 |
| best | 0.99 | 0.985 | 0.978 | 0.968 | 0.831 | 0.85 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | GBX {3.1.1.11} (TFClass) |
| TFClass ID | TFClass: 3.1.1.11.1 |
| HGNC | HGNC:4185 |
| MGI | MGI:95667 |
| EntrezGene (human) | GeneID:2636 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:231044 (SSTAR profile) |
| UniProt ID (human) | GBX1_HUMAN |
| UniProt ID (mouse) | GBX1_MOUSE |
| UniProt AC (human) | Q14549 (TFClass) |
| UniProt AC (mouse) | P82976 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 0 |
| PCM | GBX1.H12INVIVO.0.S.D.pcm |
| PWM | GBX1.H12INVIVO.0.S.D.pwm |
| PFM | GBX1.H12INVIVO.0.S.D.pfm |
| Alignment | GBX1.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | GBX1.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | GBX1.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | GBX1.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | GBX1.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2042.75 | 2303.75 | 2835.75 | 2354.75 |
| 02 | 1610.75 | 3401.75 | 2625.75 | 1898.75 |
| 03 | 2081.0 | 2247.0 | 4417.0 | 792.0 |
| 04 | 813.0 | 4429.0 | 1522.0 | 2773.0 |
| 05 | 16.0 | 119.0 | 0.0 | 9402.0 |
| 06 | 9505.0 | 0.0 | 32.0 | 0.0 |
| 07 | 9537.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 1.0 | 7.0 | 9529.0 |
| 09 | 6.0 | 339.0 | 252.0 | 8940.0 |
| 10 | 3899.0 | 67.0 | 5486.0 | 85.0 |
| 11 | 1098.0 | 3308.0 | 4069.0 | 1062.0 |
| 12 | 1663.25 | 2538.25 | 2410.25 | 2925.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.214 | 0.242 | 0.297 | 0.247 |
| 02 | 0.169 | 0.357 | 0.275 | 0.199 |
| 03 | 0.218 | 0.236 | 0.463 | 0.083 |
| 04 | 0.085 | 0.464 | 0.16 | 0.291 |
| 05 | 0.002 | 0.012 | 0.0 | 0.986 |
| 06 | 0.997 | 0.0 | 0.003 | 0.0 |
| 07 | 1.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.001 | 0.999 |
| 09 | 0.001 | 0.036 | 0.026 | 0.937 |
| 10 | 0.409 | 0.007 | 0.575 | 0.009 |
| 11 | 0.115 | 0.347 | 0.427 | 0.111 |
| 12 | 0.174 | 0.266 | 0.253 | 0.307 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.154 | -0.034 | 0.173 | -0.012 |
| 02 | -0.392 | 0.355 | 0.096 | -0.227 |
| 03 | -0.136 | -0.059 | 0.616 | -1.1 |
| 04 | -1.074 | 0.619 | -0.448 | 0.151 |
| 05 | -4.871 | -2.979 | -6.949 | 1.371 |
| 06 | 1.382 | -6.949 | -4.243 | -6.949 |
| 07 | 1.386 | -6.949 | -6.949 | -6.949 |
| 08 | -6.949 | -6.586 | -5.549 | 1.385 |
| 09 | -5.662 | -1.945 | -2.239 | 1.321 |
| 10 | 0.491 | -3.539 | 0.833 | -3.308 |
| 11 | -0.774 | 0.327 | 0.534 | -0.808 |
| 12 | -0.36 | 0.063 | 0.011 | 0.204 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.91151 |
| 0.0005 | 5.340965 |
| 0.0001 | 7.89333 |