MotifGATA5.H12INVIVO.0.SM.D
Gene (human)GATA5
(GeneCards)
Gene synonyms (human)
Gene (mouse)Gata5
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length10
ConsensusnhGATAAvnn
GC content34.98%
Information content (bits; total / per base)10.535 / 1.053
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words8780

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.989 0.981 0.986 0.976 0.982 0.97
best 0.996 0.994 0.994 0.99 0.991 0.985
Methyl HT-SELEX, 2 experiments median 0.994 0.99 0.99 0.984 0.985 0.976
best 0.995 0.992 0.992 0.987 0.987 0.979
Non-Methyl HT-SELEX, 4 experiments median 0.984 0.973 0.979 0.964 0.931 0.921
best 0.996 0.994 0.994 0.99 0.991 0.985

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.967 0.837 0.923 0.615
batch 2 0.825 0.548 0.804 0.599
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classOther C4 zinc finger-type factors {2.2} (TFClass)
TF familyC4-GATA-related {2.2.1} (TFClass)
TF subfamilyGATA double {2.2.1.1} (TFClass)
TFClass IDTFClass: 2.2.1.1.5
HGNCHGNC:15802
MGIMGI:109497
EntrezGene (human)GeneID:140628
(SSTAR profile)
EntrezGene (mouse)GeneID:14464
(SSTAR profile)
UniProt ID (human)GATA5_HUMAN
UniProt ID (mouse)GATA5_MOUSE
UniProt AC (human)Q9BWX5
(TFClass)
UniProt AC (mouse)P97489
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 2
PCM
ACGT
012341.752070.752817.751549.75
023755.251531.25772.252721.25
030.00.08780.00.0
048780.00.00.00.0
050.00.00.08780.0
068780.00.00.00.0
078780.00.00.00.0
081423.02383.04006.0968.0
093013.752166.752475.751123.75
102854.51895.51817.52212.5
PFM
ACGT
010.2670.2360.3210.177
020.4280.1740.0880.31
030.00.01.00.0
041.00.00.00.0
050.00.00.01.0
061.00.00.00.0
071.00.00.00.0
080.1620.2710.4560.11
090.3430.2470.2820.128
100.3250.2160.2070.252
PWM
ACGT
010.065-0.0580.25-0.348
020.537-0.36-1.0430.215
03-6.875-6.8751.386-6.875
041.386-6.875-6.875-6.875
05-6.875-6.875-6.8751.386
061.386-6.875-6.875-6.875
071.386-6.875-6.875-6.875
08-0.4330.0820.601-0.817
090.317-0.0130.12-0.669
100.262-0.147-0.1890.008
Standard thresholds
P-value Threshold
0.001 0.453125
0.0005 6.52178
0.0001 7.73902