MotifFOXR2.H12INVIVO.0.M.D
Gene (human)FOXR2
(GeneCards)
Gene synonyms (human)FOXN6
Gene (mouse)Foxr2
Gene synonyms (mouse)Foxn6
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length17
ConsensusdbRTWTAYRTWTAYRYn
GC content24.35%
Information content (bits; total / per base)14.357 / 0.845
Data sourcesMethyl-HT-SELEX
Aligned words9730

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Methyl HT-SELEX, 1 experiments median 0.994 0.992 0.943 0.936 0.785 0.801
best 0.994 0.992 0.943 0.936 0.785 0.801

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.894 0.281 0.876 0.569
batch 2 0.544 0.09 0.651 0.6
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyFOX {3.3.1} (TFClass)
TF subfamilyFOXR {3.3.1.18} (TFClass)
TFClass IDTFClass: 3.3.1.18.2
HGNCHGNC:30469
MGIMGI:3511682
EntrezGene (human)GeneID:139628
(SSTAR profile)
EntrezGene (mouse)GeneID:436240
(SSTAR profile)
UniProt ID (human)FOXR2_HUMAN
UniProt ID (mouse)FOXR2_MOUSE
UniProt AC (human)Q6PJQ5
(TFClass)
UniProt AC (mouse)Q3UM89
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 1
PCM
ACGT
013727.751163.752222.752615.75
021014.03185.01464.04067.0
035854.0982.01769.01125.0
04303.0444.0530.08453.0
052227.0509.0948.06046.0
06327.0328.092.08983.0
079153.017.0403.0157.0
0843.01761.01126.06800.0
093821.039.05774.096.0
100.0793.08.08929.0
114729.0665.0118.04218.0
1268.059.078.09525.0
138490.095.0974.0171.0
14162.02461.0853.06254.0
154353.0663.04128.0586.0
16858.02053.0791.06028.0
173195.51796.51989.52748.5
PFM
ACGT
010.3830.120.2280.269
020.1040.3270.150.418
030.6020.1010.1820.116
040.0310.0460.0540.869
050.2290.0520.0970.621
060.0340.0340.0090.923
070.9410.0020.0410.016
080.0040.1810.1160.699
090.3930.0040.5930.01
100.00.0820.0010.918
110.4860.0680.0120.434
120.0070.0060.0080.979
130.8730.010.10.018
140.0170.2530.0880.643
150.4470.0680.4240.06
160.0880.2110.0810.62
170.3280.1850.2040.282
PWM
ACGT
010.427-0.736-0.090.073
02-0.8740.269-0.5070.514
030.878-0.906-0.318-0.77
04-2.076-1.697-1.521.245
05-0.088-1.561-0.9410.91
06-2.001-1.998-3.2511.306
071.324-4.838-1.793-2.727
08-3.984-0.323-0.7691.027
090.451-4.0770.864-3.21
10-6.967-1.119-5.4661.3
110.664-1.294-3.0080.55
12-3.545-3.682-3.4121.364
131.249-3.22-0.914-2.643
14-2.6960.012-1.0460.944
150.582-1.2970.528-1.42
16-1.04-0.169-1.1210.907
170.273-0.303-0.2010.122
Standard thresholds
P-value Threshold
0.001 3.18036
0.0005 4.33121
0.0001 6.70951