| Motif | FOXP2.H12INVIVO.0.P.B |
| Gene (human) | FOXP2 (GeneCards) |
| Gene synonyms (human) | CAGH44, TNRC10 |
| Gene (mouse) | Foxp2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | FOXP2.H12INVIVO.0.P.B |
| Gene (human) | FOXP2 (GeneCards) |
| Gene synonyms (human) | CAGH44, TNRC10 |
| Gene (mouse) | Foxp2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 9 |
| Consensus | bbTGTTTWC |
| GC content | 37.37% |
| Information content (bits; total / per base) | 10.261 / 1.14 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (7) | 0.647 | 0.85 | 0.534 | 0.776 | 0.728 | 0.902 | 2.538 | 3.779 | 63.959 | 206.456 |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.597 | 0.325 | 0.539 | 0.303 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | FOX {3.3.1} (TFClass) |
| TF subfamily | FOXP {3.3.1.16} (TFClass) |
| TFClass ID | TFClass: 3.3.1.16.2 |
| HGNC | HGNC:13875 |
| MGI | MGI:2148705 |
| EntrezGene (human) | GeneID:93986 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:114142 (SSTAR profile) |
| UniProt ID (human) | FOXP2_HUMAN |
| UniProt ID (mouse) | FOXP2_MOUSE |
| UniProt AC (human) | O15409 (TFClass) |
| UniProt AC (mouse) | P58463 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | FOXP2.H12INVIVO.0.P.B.pcm |
| PWM | FOXP2.H12INVIVO.0.P.B.pwm |
| PFM | FOXP2.H12INVIVO.0.P.B.pfm |
| Alignment | FOXP2.H12INVIVO.0.P.B.words.tsv |
| Threshold to P-value map | FOXP2.H12INVIVO.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | FOXP2.H12INVIVO.0.P.B_jaspar_format.txt |
| MEME format | FOXP2.H12INVIVO.0.P.B_meme_format.meme |
| Transfac format | FOXP2.H12INVIVO.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 104.0 | 319.0 | 266.0 | 311.0 |
| 02 | 71.0 | 405.0 | 224.0 | 300.0 |
| 03 | 8.0 | 8.0 | 12.0 | 972.0 |
| 04 | 39.0 | 8.0 | 951.0 | 2.0 |
| 05 | 8.0 | 23.0 | 7.0 | 962.0 |
| 06 | 4.0 | 9.0 | 87.0 | 900.0 |
| 07 | 0.0 | 8.0 | 150.0 | 842.0 |
| 08 | 796.0 | 65.0 | 39.0 | 100.0 |
| 09 | 6.0 | 757.0 | 25.0 | 212.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.104 | 0.319 | 0.266 | 0.311 |
| 02 | 0.071 | 0.405 | 0.224 | 0.3 |
| 03 | 0.008 | 0.008 | 0.012 | 0.972 |
| 04 | 0.039 | 0.008 | 0.951 | 0.002 |
| 05 | 0.008 | 0.023 | 0.007 | 0.962 |
| 06 | 0.004 | 0.009 | 0.087 | 0.9 |
| 07 | 0.0 | 0.008 | 0.15 | 0.842 |
| 08 | 0.796 | 0.065 | 0.039 | 0.1 |
| 09 | 0.006 | 0.757 | 0.025 | 0.212 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.867 | 0.242 | 0.062 | 0.217 |
| 02 | -1.242 | 0.48 | -0.109 | 0.181 |
| 03 | -3.253 | -3.253 | -2.909 | 1.353 |
| 04 | -1.821 | -3.253 | 1.331 | -4.213 |
| 05 | -3.253 | -2.32 | -3.362 | 1.342 |
| 06 | -3.783 | -3.156 | -1.043 | 1.276 |
| 07 | -4.982 | -3.253 | -0.506 | 1.209 |
| 08 | 1.153 | -1.328 | -1.821 | -0.906 |
| 09 | -3.484 | 1.103 | -2.243 | -0.164 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.64797 |
| 0.0005 | 5.5889 |
| 0.0001 | 7.472115 |