| Motif | FOXP2.H12INVITRO.0.P.D |
| Gene (human) | FOXP2 (GeneCards) |
| Gene synonyms (human) | CAGH44, TNRC10 |
| Gene (mouse) | Foxp2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | FOXP2.H12INVITRO.0.P.D |
| Gene (human) | FOXP2 (GeneCards) |
| Gene synonyms (human) | CAGH44, TNRC10 |
| Gene (mouse) | Foxp2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 8 |
| Consensus | bTGTTTWC |
| GC content | 37.38% |
| Information content (bits; total / per base) | 9.495 / 1.187 |
| Data sources | ChIP-Seq |
| Aligned words | 1001 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (7) | 0.65 | 0.85 | 0.534 | 0.775 | 0.727 | 0.892 | 2.393 | 3.535 | 65.108 | 201.444 |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.597 | 0.308 | 0.574 | 0.369 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | FOX {3.3.1} (TFClass) |
| TF subfamily | FOXP {3.3.1.16} (TFClass) |
| TFClass ID | TFClass: 3.3.1.16.2 |
| HGNC | HGNC:13875 |
| MGI | MGI:2148705 |
| EntrezGene (human) | GeneID:93986 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:114142 (SSTAR profile) |
| UniProt ID (human) | FOXP2_HUMAN |
| UniProt ID (mouse) | FOXP2_MOUSE |
| UniProt AC (human) | O15409 (TFClass) |
| UniProt AC (mouse) | P58463 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | FOXP2.H12INVITRO.0.P.D.pcm |
| PWM | FOXP2.H12INVITRO.0.P.D.pwm |
| PFM | FOXP2.H12INVITRO.0.P.D.pfm |
| Alignment | FOXP2.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | FOXP2.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | FOXP2.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | FOXP2.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | FOXP2.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 67.0 | 389.0 | 237.0 | 308.0 |
| 02 | 17.0 | 4.0 | 7.0 | 973.0 |
| 03 | 22.0 | 7.0 | 966.0 | 6.0 |
| 04 | 9.0 | 41.0 | 33.0 | 918.0 |
| 05 | 6.0 | 14.0 | 108.0 | 873.0 |
| 06 | 4.0 | 9.0 | 210.0 | 778.0 |
| 07 | 713.0 | 93.0 | 79.0 | 116.0 |
| 08 | 7.0 | 783.0 | 13.0 | 198.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.067 | 0.389 | 0.237 | 0.308 |
| 02 | 0.017 | 0.004 | 0.007 | 0.972 |
| 03 | 0.022 | 0.007 | 0.965 | 0.006 |
| 04 | 0.009 | 0.041 | 0.033 | 0.917 |
| 05 | 0.006 | 0.014 | 0.108 | 0.872 |
| 06 | 0.004 | 0.009 | 0.21 | 0.777 |
| 07 | 0.712 | 0.093 | 0.079 | 0.116 |
| 08 | 0.007 | 0.782 | 0.013 | 0.198 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.299 | 0.439 | -0.054 | 0.206 |
| 02 | -2.599 | -3.784 | -3.363 | 1.353 |
| 03 | -2.363 | -3.363 | 1.346 | -3.485 |
| 04 | -3.157 | -1.775 | -1.982 | 1.295 |
| 05 | -3.485 | -2.774 | -0.831 | 1.245 |
| 06 | -3.784 | -3.157 | -0.174 | 1.13 |
| 07 | 1.043 | -0.978 | -1.138 | -0.761 |
| 08 | -3.363 | 1.136 | -2.84 | -0.232 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.95808 |
| 0.0005 | 5.654845 |
| 0.0001 | 7.32589 |