FOXK2.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	FOXK2.H12INVIVO.0.P.B
Gene (human)	FOXK2 (GeneCards)
Gene synonyms (human)	ILF, ILF1
Gene (mouse)	Foxk2
Gene synonyms (mouse)	Ilf1
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	bbbTGTTTMChb
GC content	38.75%
Information content (bits; total / per base)	10.816 / 0.901
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (25)	0.74	0.892	0.669	0.846	0.796	0.911	2.903	4.347	165.62	422.347

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.619	0.131	0.575	0.378

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Fork head/winged helix factors {3.3} (TFClass)
TF family	FOX {3.3.1} (TFClass)
TF subfamily	FOXK {3.3.1.11} (TFClass)
TFClass ID	TFClass: 3.3.1.11.2
HGNC	HGNC:6036
MGI	MGI:1916087
EntrezGene (human)	GeneID:3607 (SSTAR profile)
EntrezGene (mouse)	GeneID:68837 (SSTAR profile)
UniProt ID (human)	FOXK2_HUMAN
UniProt ID (mouse)	FOXK2_MOUSE
UniProt AC (human)	Q01167 (TFClass)
UniProt AC (mouse)	Q3UCQ1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	FOXK2.H12INVIVO.0.P.B.pcm
PWM	FOXK2.H12INVIVO.0.P.B.pwm
PFM	FOXK2.H12INVIVO.0.P.B.pfm
Alignment	FOXK2.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	FOXK2.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	FOXK2.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	FOXK2.H12INVIVO.0.P.B_meme_format.meme
Transfac format	FOXK2.H12INVIVO.0.P.B_transfac_format.txt
Homer format	FOXK2.H12INVIVO.0.P.B_homer_format_0.001.txt FOXK2.H12INVIVO.0.P.B_homer_format_0.0005.txt FOXK2.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	99.0	355.0	284.0	262.0
02	60.0	471.0	254.0	215.0
03	131.0	256.0	163.0	450.0
04	9.0	3.0	6.0	982.0
05	51.0	12.0	933.0	4.0
06	4.0	5.0	3.0	988.0
07	9.0	7.0	48.0	936.0
08	4.0	3.0	212.0	781.0
09	716.0	138.0	12.0	134.0
10	4.0	742.0	16.0	238.0
11	397.0	237.0	148.0	218.0
12	148.0	189.0	153.0	510.0

PFM

	A	C	G	T
01	0.099	0.355	0.284	0.262
02	0.06	0.471	0.254	0.215
03	0.131	0.256	0.163	0.45
04	0.009	0.003	0.006	0.982
05	0.051	0.012	0.933	0.004
06	0.004	0.005	0.003	0.988
07	0.009	0.007	0.048	0.936
08	0.004	0.003	0.212	0.781
09	0.716	0.138	0.012	0.134
10	0.004	0.742	0.016	0.238
11	0.397	0.237	0.148	0.218
12	0.148	0.189	0.153	0.51

PWM

	A	C	G	T
01	-0.916	0.349	0.127	0.047
02	-1.406	0.63	0.016	-0.15
03	-0.64	0.024	-0.424	0.585
04	-3.156	-3.975	-3.484	1.363
05	-1.563	-2.909	1.312	-3.783
06	-3.783	-3.622	-3.975	1.369
07	-3.156	-3.362	-1.622	1.315
08	-3.783	-3.975	-0.164	1.134
09	1.048	-0.589	-2.909	-0.618
10	-3.783	1.083	-2.653	-0.049
11	0.46	-0.053	-0.52	-0.136
12	-0.52	-0.278	-0.487	0.709

Standard thresholds

P-value	Threshold
0.001	4.45161
0.0005	5.493685
0.0001	7.52997