| Motif | FOXK2.H12INVITRO.0.P.D |
| Gene (human) | FOXK2 (GeneCards) |
| Gene synonyms (human) | ILF, ILF1 |
| Gene (mouse) | Foxk2 |
| Gene synonyms (mouse) | Ilf1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | FOXK2.H12INVITRO.0.P.D |
| Gene (human) | FOXK2 (GeneCards) |
| Gene synonyms (human) | ILF, ILF1 |
| Gene (mouse) | Foxk2 |
| Gene synonyms (mouse) | Ilf1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | bbTGTTTMChb |
| GC content | 36.55% |
| Information content (bits; total / per base) | 10.698 / 0.973 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (25) | 0.739 | 0.887 | 0.662 | 0.836 | 0.792 | 0.908 | 2.911 | 4.214 | 161.678 | 414.921 |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.657 | 0.147 | 0.602 | 0.398 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | FOX {3.3.1} (TFClass) |
| TF subfamily | FOXK {3.3.1.11} (TFClass) |
| TFClass ID | TFClass: 3.3.1.11.2 |
| HGNC | HGNC:6036 |
| MGI | MGI:1916087 |
| EntrezGene (human) | GeneID:3607 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:68837 (SSTAR profile) |
| UniProt ID (human) | FOXK2_HUMAN |
| UniProt ID (mouse) | FOXK2_MOUSE |
| UniProt AC (human) | Q01167 (TFClass) |
| UniProt AC (mouse) | Q3UCQ1 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | FOXK2.H12INVITRO.0.P.D.pcm |
| PWM | FOXK2.H12INVITRO.0.P.D.pwm |
| PFM | FOXK2.H12INVITRO.0.P.D.pfm |
| Alignment | FOXK2.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | FOXK2.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | FOXK2.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | FOXK2.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | FOXK2.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 57.0 | 476.0 | 254.0 | 213.0 |
| 02 | 132.0 | 251.0 | 162.0 | 455.0 |
| 03 | 10.0 | 3.0 | 8.0 | 979.0 |
| 04 | 50.0 | 11.0 | 935.0 | 4.0 |
| 05 | 4.0 | 7.0 | 2.0 | 987.0 |
| 06 | 8.0 | 8.0 | 46.0 | 938.0 |
| 07 | 4.0 | 3.0 | 206.0 | 787.0 |
| 08 | 711.0 | 143.0 | 11.0 | 135.0 |
| 09 | 4.0 | 743.0 | 19.0 | 234.0 |
| 10 | 396.0 | 242.0 | 147.0 | 215.0 |
| 11 | 148.0 | 187.0 | 156.0 | 509.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.057 | 0.476 | 0.254 | 0.213 |
| 02 | 0.132 | 0.251 | 0.162 | 0.455 |
| 03 | 0.01 | 0.003 | 0.008 | 0.979 |
| 04 | 0.05 | 0.011 | 0.935 | 0.004 |
| 05 | 0.004 | 0.007 | 0.002 | 0.987 |
| 06 | 0.008 | 0.008 | 0.046 | 0.938 |
| 07 | 0.004 | 0.003 | 0.206 | 0.787 |
| 08 | 0.711 | 0.143 | 0.011 | 0.135 |
| 09 | 0.004 | 0.743 | 0.019 | 0.234 |
| 10 | 0.396 | 0.242 | 0.147 | 0.215 |
| 11 | 0.148 | 0.187 | 0.156 | 0.509 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.455 | 0.641 | 0.016 | -0.159 |
| 02 | -0.633 | 0.004 | -0.43 | 0.596 |
| 03 | -3.066 | -3.975 | -3.253 | 1.36 |
| 04 | -1.582 | -2.985 | 1.314 | -3.783 |
| 05 | -3.783 | -3.362 | -4.213 | 1.368 |
| 06 | -3.253 | -3.253 | -1.663 | 1.317 |
| 07 | -3.783 | -3.975 | -0.192 | 1.142 |
| 08 | 1.041 | -0.553 | -2.985 | -0.61 |
| 09 | -3.783 | 1.085 | -2.497 | -0.066 |
| 10 | 0.457 | -0.032 | -0.526 | -0.15 |
| 11 | -0.52 | -0.288 | -0.467 | 0.707 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.483145 |
| 0.0005 | 5.52588 |
| 0.0001 | 7.54475 |