| Motif | FOXK1.H12INVITRO.0.PS.A |
| Gene (human) | FOXK1 (GeneCards) |
| Gene synonyms (human) | MNF |
| Gene (mouse) | Foxk1 |
| Gene synonyms (mouse) | Mnf |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | FOXK1.H12INVITRO.0.PS.A |
| Gene (human) | FOXK1 (GeneCards) |
| Gene synonyms (human) | MNF |
| Gene (mouse) | Foxk1 |
| Gene synonyms (mouse) | Mnf |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 9 |
| Consensus | TGTTTMYnb |
| GC content | 36.08% |
| Information content (bits; total / per base) | 8.62 / 0.958 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 1008 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (7) | 0.736 | 0.769 | 0.607 | 0.647 | 0.756 | 0.811 | 2.496 | 2.812 | 216.523 | 249.495 |
| Mouse | 2 (14) | 0.67 | 0.82 | 0.529 | 0.678 | 0.762 | 0.884 | 2.271 | 3.214 | 84.484 | 222.469 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.99 | 0.986 | 0.978 | 0.969 | 0.943 | 0.927 |
| best | 0.99 | 0.986 | 0.978 | 0.969 | 0.943 | 0.927 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.611 | 0.295 | 0.693 | 0.434 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | FOX {3.3.1} (TFClass) |
| TF subfamily | FOXK {3.3.1.11} (TFClass) |
| TFClass ID | TFClass: 3.3.1.11.1 |
| HGNC | HGNC:23480 |
| MGI | MGI:1347488 |
| EntrezGene (human) | GeneID:221937 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17425 (SSTAR profile) |
| UniProt ID (human) | FOXK1_HUMAN |
| UniProt ID (mouse) | FOXK1_MOUSE |
| UniProt AC (human) | P85037 (TFClass) |
| UniProt AC (mouse) | P42128 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 2 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | FOXK1.H12INVITRO.0.PS.A.pcm |
| PWM | FOXK1.H12INVITRO.0.PS.A.pwm |
| PFM | FOXK1.H12INVITRO.0.PS.A.pfm |
| Alignment | FOXK1.H12INVITRO.0.PS.A.words.tsv |
| Threshold to P-value map | FOXK1.H12INVITRO.0.PS.A.thr |
| Motif in other formats | |
| JASPAR format | FOXK1.H12INVITRO.0.PS.A_jaspar_format.txt |
| MEME format | FOXK1.H12INVITRO.0.PS.A_meme_format.meme |
| Transfac format | FOXK1.H12INVITRO.0.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 36.0 | 12.0 | 8.0 | 952.0 |
| 02 | 70.0 | 21.0 | 907.0 | 10.0 |
| 03 | 23.0 | 13.0 | 20.0 | 952.0 |
| 04 | 5.0 | 3.0 | 52.0 | 948.0 |
| 05 | 7.0 | 6.0 | 309.0 | 686.0 |
| 06 | 569.0 | 229.0 | 31.0 | 179.0 |
| 07 | 15.0 | 660.0 | 62.0 | 271.0 |
| 08 | 305.0 | 217.0 | 275.0 | 211.0 |
| 09 | 145.0 | 275.0 | 173.0 | 415.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.036 | 0.012 | 0.008 | 0.944 |
| 02 | 0.069 | 0.021 | 0.9 | 0.01 |
| 03 | 0.023 | 0.013 | 0.02 | 0.944 |
| 04 | 0.005 | 0.003 | 0.052 | 0.94 |
| 05 | 0.007 | 0.006 | 0.307 | 0.681 |
| 06 | 0.564 | 0.227 | 0.031 | 0.178 |
| 07 | 0.015 | 0.655 | 0.062 | 0.269 |
| 08 | 0.303 | 0.215 | 0.273 | 0.209 |
| 09 | 0.144 | 0.273 | 0.172 | 0.412 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.906 | -2.917 | -3.261 | 1.324 |
| 02 | -1.263 | -2.413 | 1.276 | -3.074 |
| 03 | -2.328 | -2.846 | -2.458 | 1.324 |
| 04 | -3.63 | -3.983 | -1.552 | 1.32 |
| 05 | -3.37 | -3.491 | 0.203 | 0.997 |
| 06 | 0.811 | -0.095 | -2.048 | -0.339 |
| 07 | -2.719 | 0.959 | -1.382 | 0.072 |
| 08 | 0.19 | -0.148 | 0.087 | -0.176 |
| 09 | -0.548 | 0.087 | -0.373 | 0.496 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.94283 |
| 0.0005 | 5.9664 |
| 0.0001 | 7.44455 |