| Motif | FOXK1.H12CORE.0.PS.A |
| Gene (human) | FOXK1 (GeneCards) |
| Gene synonyms (human) | MNF |
| Gene (mouse) | Foxk1 |
| Gene synonyms (mouse) | Mnf |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | FOXK1.H12CORE.0.PS.A |
| Gene (human) | FOXK1 (GeneCards) |
| Gene synonyms (human) | MNF |
| Gene (mouse) | Foxk1 |
| Gene synonyms (mouse) | Mnf |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 10 |
| Consensus | TGTTTWChhh |
| GC content | 27.63% |
| Information content (bits; total / per base) | 11.015 / 1.101 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (7) | 0.693 | 0.731 | 0.559 | 0.609 | 0.756 | 0.816 | 2.677 | 2.993 | 156.319 | 218.658 |
| Mouse | 2 (14) | 0.642 | 0.805 | 0.491 | 0.669 | 0.796 | 0.916 | 2.572 | 3.694 | 73.828 | 220.432 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.981 | 0.968 | 0.973 | 0.957 | 0.941 | 0.92 |
| best | 0.981 | 0.968 | 0.973 | 0.957 | 0.941 | 0.92 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.653 | 0.309 | 0.73 | 0.468 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | FOX {3.3.1} (TFClass) |
| TF subfamily | FOXK {3.3.1.11} (TFClass) |
| TFClass ID | TFClass: 3.3.1.11.1 |
| HGNC | HGNC:23480 |
| MGI | MGI:1347488 |
| EntrezGene (human) | GeneID:221937 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17425 (SSTAR profile) |
| UniProt ID (human) | FOXK1_HUMAN |
| UniProt ID (mouse) | FOXK1_MOUSE |
| UniProt AC (human) | P85037 (TFClass) |
| UniProt AC (mouse) | P42128 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 2 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | FOXK1.H12CORE.0.PS.A.pcm |
| PWM | FOXK1.H12CORE.0.PS.A.pwm |
| PFM | FOXK1.H12CORE.0.PS.A.pfm |
| Alignment | FOXK1.H12CORE.0.PS.A.words.tsv |
| Threshold to P-value map | FOXK1.H12CORE.0.PS.A.thr |
| Motif in other formats | |
| JASPAR format | FOXK1.H12CORE.0.PS.A_jaspar_format.txt |
| MEME format | FOXK1.H12CORE.0.PS.A_meme_format.meme |
| Transfac format | FOXK1.H12CORE.0.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 10.0 | 3.0 | 1.0 | 986.0 |
| 02 | 100.0 | 4.0 | 896.0 | 0.0 |
| 03 | 2.0 | 3.0 | 0.0 | 995.0 |
| 04 | 3.0 | 1.0 | 25.0 | 971.0 |
| 05 | 1.0 | 3.0 | 139.0 | 857.0 |
| 06 | 758.0 | 62.0 | 26.0 | 154.0 |
| 07 | 1.0 | 692.0 | 18.0 | 289.0 |
| 08 | 443.0 | 195.0 | 91.0 | 271.0 |
| 09 | 160.0 | 198.0 | 122.0 | 520.0 |
| 10 | 262.0 | 157.0 | 127.0 | 454.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.01 | 0.003 | 0.001 | 0.986 |
| 02 | 0.1 | 0.004 | 0.896 | 0.0 |
| 03 | 0.002 | 0.003 | 0.0 | 0.995 |
| 04 | 0.003 | 0.001 | 0.025 | 0.971 |
| 05 | 0.001 | 0.003 | 0.139 | 0.857 |
| 06 | 0.758 | 0.062 | 0.026 | 0.154 |
| 07 | 0.001 | 0.692 | 0.018 | 0.289 |
| 08 | 0.443 | 0.195 | 0.091 | 0.271 |
| 09 | 0.16 | 0.198 | 0.122 | 0.52 |
| 10 | 0.262 | 0.157 | 0.127 | 0.454 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -3.066 | -3.975 | -4.525 | 1.367 |
| 02 | -0.906 | -3.783 | 1.272 | -4.982 |
| 03 | -4.213 | -3.975 | -4.982 | 1.376 |
| 04 | -3.975 | -4.525 | -2.243 | 1.352 |
| 05 | -4.525 | -3.975 | -0.582 | 1.227 |
| 06 | 1.105 | -1.374 | -2.206 | -0.48 |
| 07 | -4.525 | 1.014 | -2.546 | 0.144 |
| 08 | 0.569 | -0.247 | -0.999 | 0.08 |
| 09 | -0.442 | -0.231 | -0.71 | 0.729 |
| 10 | 0.047 | -0.461 | -0.671 | 0.594 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.400475 |
| 0.0005 | 5.5363 |
| 0.0001 | 7.58028 |