MotifFOXJ3.H12INVIVO.0.SM.D
Gene (human)FOXJ3
(GeneCards)
Gene synonyms (human)KIAA1041
Gene (mouse)Foxj3
Gene synonyms (mouse)Kiaa1041
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusndTGTTTACRbn
GC content34.24%
Information content (bits; total / per base)13.49 / 1.124
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words7305

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.896 0.879 0.821 0.817 0.771 0.772
best 0.997 0.995 0.995 0.992 0.989 0.984
Methyl HT-SELEX, 1 experiments median 0.997 0.995 0.995 0.992 0.989 0.984
best 0.997 0.995 0.995 0.992 0.989 0.984
Non-Methyl HT-SELEX, 3 experiments median 0.804 0.777 0.658 0.661 0.576 0.594
best 0.988 0.981 0.983 0.972 0.966 0.951
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyFOX {3.3.1} (TFClass)
TF subfamilyFOXJ {3.3.1.10} (TFClass)
TFClass IDTFClass: 3.3.1.10.3
HGNCHGNC:29178
MGIMGI:2443432
EntrezGene (human)GeneID:22887
(SSTAR profile)
EntrezGene (mouse)GeneID:230700
(SSTAR profile)
UniProt ID (human)FOXJ3_HUMAN
UniProt ID (mouse)FOXJ3_MOUSE
UniProt AC (human)Q9UPW0
(TFClass)
UniProt AC (mouse)Q8BUR3
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
011770.01250.01629.02656.0
021673.0852.0872.03908.0
030.0305.00.07000.0
0436.00.07269.00.0
050.00.00.07305.0
060.00.00.07305.0
070.00.01004.06301.0
087053.01.0251.00.0
090.05726.013.01566.0
10949.0859.04802.0695.0
11654.51563.5817.54269.5
121880.01410.01393.02622.0
PFM
ACGT
010.2420.1710.2230.364
020.2290.1170.1190.535
030.00.0420.00.958
040.0050.00.9950.0
050.00.00.01.0
060.00.00.01.0
070.00.00.1370.863
080.9660.00.0340.0
090.00.7840.0020.214
100.130.1180.6570.095
110.090.2140.1120.584
120.2570.1930.1910.359
PWM
ACGT
01-0.031-0.379-0.1140.374
02-0.088-0.761-0.7380.76
03-6.712-1.784-6.7121.343
04-3.868-6.7121.38-6.712
05-6.712-6.712-6.7121.385
06-6.712-6.712-6.7121.385
07-6.712-6.712-0.5971.238
081.35-6.341-1.977-6.712
09-6.7121.142-4.788-0.154
10-0.653-0.7530.966-0.964
11-1.024-0.155-0.8020.849
120.029-0.258-0.270.361
Standard thresholds
P-value Threshold
0.001 1.85342
0.0005 3.716935
0.0001 7.24703