| Motif | FOXJ2.H12INVIVO.2.S.B |
| Gene (human) | FOXJ2 (GeneCards) |
| Gene synonyms (human) | FHX |
| Gene (mouse) | Foxj2 |
| Gene synonyms (mouse) | Fhx |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 2 |
| Quality | B |
| Motif | FOXJ2.H12INVIVO.2.S.B |
| Gene (human) | FOXJ2 (GeneCards) |
| Gene synonyms (human) | FHX |
| Gene (mouse) | Foxj2 |
| Gene synonyms (mouse) | Fhx |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 2 |
| Quality | B |
| Motif length | 20 |
| Consensus | nnndddKddWTGTTTWYddd |
| GC content | 31.7% |
| Information content (bits; total / per base) | 12.643 / 0.632 |
| Data sources | HT-SELEX |
| Aligned words | 8766 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (6) | 0.564 | 0.587 | 0.369 | 0.386 | 0.741 | 0.781 | 2.368 | 2.614 | 34.098 | 44.796 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.921 | 0.882 | 0.863 | 0.817 | 0.775 | 0.749 |
| best | 0.962 | 0.949 | 0.906 | 0.86 | 0.877 | 0.827 | |
| Methyl HT-SELEX, 2 experiments | median | 0.935 | 0.901 | 0.899 | 0.857 | 0.838 | 0.801 |
| best | 0.939 | 0.908 | 0.906 | 0.86 | 0.877 | 0.827 | |
| Non-Methyl HT-SELEX, 4 experiments | median | 0.91 | 0.867 | 0.828 | 0.809 | 0.696 | 0.705 |
| best | 0.962 | 0.949 | 0.876 | 0.824 | 0.816 | 0.771 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.633 | 0.37 | 0.457 | 0.32 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | FOX {3.3.1} (TFClass) |
| TF subfamily | FOXJ {3.3.1.10} (TFClass) |
| TFClass ID | TFClass: 3.3.1.10.2 |
| HGNC | HGNC:24818 |
| MGI | MGI:1926805 |
| EntrezGene (human) | GeneID:55810 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:60611 (SSTAR profile) |
| UniProt ID (human) | FOXJ2_HUMAN |
| UniProt ID (mouse) | FOXJ2_MOUSE |
| UniProt AC (human) | Q9P0K8 (TFClass) |
| UniProt AC (mouse) | Q9ES18 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 2 |
| PCM | FOXJ2.H12INVIVO.2.S.B.pcm |
| PWM | FOXJ2.H12INVIVO.2.S.B.pwm |
| PFM | FOXJ2.H12INVIVO.2.S.B.pfm |
| Alignment | FOXJ2.H12INVIVO.2.S.B.words.tsv |
| Threshold to P-value map | FOXJ2.H12INVIVO.2.S.B.thr |
| Motif in other formats | |
| JASPAR format | FOXJ2.H12INVIVO.2.S.B_jaspar_format.txt |
| MEME format | FOXJ2.H12INVIVO.2.S.B_meme_format.meme |
| Transfac format | FOXJ2.H12INVIVO.2.S.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1688.5 | 2730.5 | 2063.5 | 2283.5 |
| 02 | 1687.0 | 2613.0 | 2235.0 | 2231.0 |
| 03 | 1675.0 | 1933.0 | 1736.0 | 3422.0 |
| 04 | 1364.0 | 939.0 | 2303.0 | 4160.0 |
| 05 | 992.0 | 668.0 | 2513.0 | 4593.0 |
| 06 | 1102.0 | 556.0 | 3618.0 | 3490.0 |
| 07 | 456.0 | 542.0 | 995.0 | 6773.0 |
| 08 | 1470.0 | 719.0 | 2056.0 | 4521.0 |
| 09 | 2640.0 | 498.0 | 1569.0 | 4059.0 |
| 10 | 2757.0 | 629.0 | 619.0 | 4761.0 |
| 11 | 47.0 | 240.0 | 62.0 | 8417.0 |
| 12 | 1585.0 | 28.0 | 7149.0 | 4.0 |
| 13 | 6.0 | 104.0 | 11.0 | 8645.0 |
| 14 | 443.0 | 44.0 | 64.0 | 8215.0 |
| 15 | 501.0 | 47.0 | 1353.0 | 6865.0 |
| 16 | 6827.0 | 190.0 | 742.0 | 1007.0 |
| 17 | 69.0 | 4308.0 | 555.0 | 3834.0 |
| 18 | 1922.0 | 833.0 | 2420.0 | 3591.0 |
| 19 | 1208.75 | 1094.75 | 1810.75 | 4651.75 |
| 20 | 1632.5 | 1238.5 | 1743.5 | 4151.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.193 | 0.311 | 0.235 | 0.26 |
| 02 | 0.192 | 0.298 | 0.255 | 0.255 |
| 03 | 0.191 | 0.221 | 0.198 | 0.39 |
| 04 | 0.156 | 0.107 | 0.263 | 0.475 |
| 05 | 0.113 | 0.076 | 0.287 | 0.524 |
| 06 | 0.126 | 0.063 | 0.413 | 0.398 |
| 07 | 0.052 | 0.062 | 0.114 | 0.773 |
| 08 | 0.168 | 0.082 | 0.235 | 0.516 |
| 09 | 0.301 | 0.057 | 0.179 | 0.463 |
| 10 | 0.315 | 0.072 | 0.071 | 0.543 |
| 11 | 0.005 | 0.027 | 0.007 | 0.96 |
| 12 | 0.181 | 0.003 | 0.816 | 0.0 |
| 13 | 0.001 | 0.012 | 0.001 | 0.986 |
| 14 | 0.051 | 0.005 | 0.007 | 0.937 |
| 15 | 0.057 | 0.005 | 0.154 | 0.783 |
| 16 | 0.779 | 0.022 | 0.085 | 0.115 |
| 17 | 0.008 | 0.491 | 0.063 | 0.437 |
| 18 | 0.219 | 0.095 | 0.276 | 0.41 |
| 19 | 0.138 | 0.125 | 0.207 | 0.531 |
| 20 | 0.186 | 0.141 | 0.199 | 0.474 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.26 | 0.22 | -0.06 | 0.041 |
| 02 | -0.261 | 0.176 | 0.02 | 0.018 |
| 03 | -0.268 | -0.125 | -0.233 | 0.445 |
| 04 | -0.474 | -0.846 | 0.05 | 0.64 |
| 05 | -0.791 | -1.186 | 0.137 | 0.739 |
| 06 | -0.686 | -1.369 | 0.501 | 0.465 |
| 07 | -1.566 | -1.394 | -0.788 | 1.128 |
| 08 | -0.399 | -1.112 | -0.064 | 0.724 |
| 09 | 0.186 | -1.478 | -0.334 | 0.616 |
| 10 | 0.229 | -1.246 | -1.262 | 0.775 |
| 11 | -3.796 | -2.203 | -3.53 | 1.345 |
| 12 | -0.324 | -4.283 | 1.182 | -5.858 |
| 13 | -5.581 | -3.027 | -5.108 | 1.372 |
| 14 | -1.595 | -3.859 | -3.5 | 1.321 |
| 15 | -1.472 | -3.796 | -0.482 | 1.141 |
| 16 | 1.136 | -2.434 | -1.081 | -0.776 |
| 17 | -3.427 | 0.675 | -1.37 | 0.559 |
| 18 | -0.131 | -0.966 | 0.099 | 0.493 |
| 19 | -0.594 | -0.693 | -0.191 | 0.752 |
| 20 | -0.294 | -0.57 | -0.228 | 0.638 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.92516 |
| 0.0005 | 4.97466 |
| 0.0001 | 7.09621 |