| Motif | FOXJ2.H12INVITRO.2.S.B |
| Gene (human) | FOXJ2 (GeneCards) |
| Gene synonyms (human) | FHX |
| Gene (mouse) | Foxj2 |
| Gene synonyms (mouse) | Fhx |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 2 |
| Quality | B |
| Motif | FOXJ2.H12INVITRO.2.S.B |
| Gene (human) | FOXJ2 (GeneCards) |
| Gene synonyms (human) | FHX |
| Gene (mouse) | Foxj2 |
| Gene synonyms (mouse) | Fhx |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 2 |
| Quality | B |
| Motif length | 20 |
| Consensus | nnhdKKTWdWTGTTTAYdbd |
| GC content | 29.38% |
| Information content (bits; total / per base) | 16.188 / 0.809 |
| Data sources | HT-SELEX |
| Aligned words | 8212 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (6) | 0.577 | 0.6 | 0.379 | 0.399 | 0.744 | 0.783 | 2.307 | 2.558 | 25.76 | 34.538 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.926 | 0.891 | 0.867 | 0.828 | 0.772 | 0.751 |
| best | 0.973 | 0.964 | 0.912 | 0.869 | 0.881 | 0.834 | |
| Methyl HT-SELEX, 2 experiments | median | 0.941 | 0.91 | 0.904 | 0.865 | 0.839 | 0.805 |
| best | 0.945 | 0.918 | 0.912 | 0.869 | 0.881 | 0.834 | |
| Non-Methyl HT-SELEX, 4 experiments | median | 0.916 | 0.877 | 0.832 | 0.817 | 0.694 | 0.707 |
| best | 0.973 | 0.964 | 0.883 | 0.834 | 0.816 | 0.776 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.637 | 0.352 | 0.478 | 0.348 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | FOX {3.3.1} (TFClass) |
| TF subfamily | FOXJ {3.3.1.10} (TFClass) |
| TFClass ID | TFClass: 3.3.1.10.2 |
| HGNC | HGNC:24818 |
| MGI | MGI:1926805 |
| EntrezGene (human) | GeneID:55810 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:60611 (SSTAR profile) |
| UniProt ID (human) | FOXJ2_HUMAN |
| UniProt ID (mouse) | FOXJ2_MOUSE |
| UniProt AC (human) | Q9P0K8 (TFClass) |
| UniProt AC (mouse) | Q9ES18 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 2 |
| PCM | FOXJ2.H12INVITRO.2.S.B.pcm |
| PWM | FOXJ2.H12INVITRO.2.S.B.pwm |
| PFM | FOXJ2.H12INVITRO.2.S.B.pfm |
| Alignment | FOXJ2.H12INVITRO.2.S.B.words.tsv |
| Threshold to P-value map | FOXJ2.H12INVITRO.2.S.B.thr |
| Motif in other formats | |
| JASPAR format | FOXJ2.H12INVITRO.2.S.B_jaspar_format.txt |
| MEME format | FOXJ2.H12INVITRO.2.S.B_meme_format.meme |
| Transfac format | FOXJ2.H12INVITRO.2.S.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1502.5 | 2447.5 | 2002.5 | 2259.5 |
| 02 | 1554.5 | 2447.5 | 2109.5 | 2100.5 |
| 03 | 1628.0 | 1627.0 | 1543.0 | 3414.0 |
| 04 | 1105.0 | 597.0 | 1935.0 | 4575.0 |
| 05 | 611.0 | 253.0 | 2565.0 | 4783.0 |
| 06 | 654.0 | 135.0 | 4237.0 | 3186.0 |
| 07 | 118.0 | 260.0 | 227.0 | 7607.0 |
| 08 | 1741.0 | 236.0 | 1264.0 | 4971.0 |
| 09 | 2956.0 | 358.0 | 1539.0 | 3359.0 |
| 10 | 3446.0 | 658.0 | 198.0 | 3910.0 |
| 11 | 5.0 | 55.0 | 4.0 | 8148.0 |
| 12 | 1628.0 | 2.0 | 6582.0 | 0.0 |
| 13 | 0.0 | 3.0 | 0.0 | 8209.0 |
| 14 | 143.0 | 11.0 | 0.0 | 8058.0 |
| 15 | 162.0 | 0.0 | 530.0 | 7520.0 |
| 16 | 7705.0 | 22.0 | 199.0 | 286.0 |
| 17 | 7.0 | 4793.0 | 132.0 | 3280.0 |
| 18 | 1538.0 | 940.0 | 2356.0 | 3378.0 |
| 19 | 991.25 | 1170.25 | 1880.25 | 4170.25 |
| 20 | 1492.75 | 1232.75 | 1704.75 | 3781.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.183 | 0.298 | 0.244 | 0.275 |
| 02 | 0.189 | 0.298 | 0.257 | 0.256 |
| 03 | 0.198 | 0.198 | 0.188 | 0.416 |
| 04 | 0.135 | 0.073 | 0.236 | 0.557 |
| 05 | 0.074 | 0.031 | 0.312 | 0.582 |
| 06 | 0.08 | 0.016 | 0.516 | 0.388 |
| 07 | 0.014 | 0.032 | 0.028 | 0.926 |
| 08 | 0.212 | 0.029 | 0.154 | 0.605 |
| 09 | 0.36 | 0.044 | 0.187 | 0.409 |
| 10 | 0.42 | 0.08 | 0.024 | 0.476 |
| 11 | 0.001 | 0.007 | 0.0 | 0.992 |
| 12 | 0.198 | 0.0 | 0.802 | 0.0 |
| 13 | 0.0 | 0.0 | 0.0 | 1.0 |
| 14 | 0.017 | 0.001 | 0.0 | 0.981 |
| 15 | 0.02 | 0.0 | 0.065 | 0.916 |
| 16 | 0.938 | 0.003 | 0.024 | 0.035 |
| 17 | 0.001 | 0.584 | 0.016 | 0.399 |
| 18 | 0.187 | 0.114 | 0.287 | 0.411 |
| 19 | 0.121 | 0.143 | 0.229 | 0.508 |
| 20 | 0.182 | 0.15 | 0.208 | 0.461 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.312 | 0.176 | -0.025 | 0.096 |
| 02 | -0.278 | 0.176 | 0.027 | 0.023 |
| 03 | -0.232 | -0.232 | -0.285 | 0.508 |
| 04 | -0.619 | -1.232 | -0.059 | 0.801 |
| 05 | -1.209 | -2.086 | 0.222 | 0.845 |
| 06 | -1.142 | -2.706 | 0.724 | 0.439 |
| 07 | -2.839 | -2.059 | -2.193 | 1.309 |
| 08 | -0.165 | -2.155 | -0.484 | 0.884 |
| 09 | 0.364 | -1.741 | -0.288 | 0.492 |
| 10 | 0.517 | -1.136 | -2.329 | 0.644 |
| 11 | -5.647 | -3.581 | -5.795 | 1.378 |
| 12 | -0.232 | -6.18 | 1.164 | -6.816 |
| 13 | -6.816 | -5.969 | -6.816 | 1.385 |
| 14 | -2.65 | -5.044 | -6.816 | 1.367 |
| 15 | -2.527 | -6.816 | -1.351 | 1.297 |
| 16 | 1.322 | -4.44 | -2.324 | -1.964 |
| 17 | -5.403 | 0.847 | -2.728 | 0.468 |
| 18 | -0.288 | -0.78 | 0.138 | 0.498 |
| 19 | -0.727 | -0.561 | -0.088 | 0.708 |
| 20 | -0.318 | -0.509 | -0.186 | 0.61 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.45836 |
| 0.0005 | 2.96176 |
| 0.0001 | 6.00476 |